Pseudomonas aeruginosa DK2: PADK2_22495
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Entry
PADK2_22495 CDS
T02161
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pdk
Pseudomonas aeruginosa DK2
Pathway
pdk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PADK2_22495 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdk03400
]
PADK2_22495 (sbcB)
Enzymes [BR:
pdk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
PADK2_22495 (sbcB)
DNA repair and recombination proteins [BR:
pdk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PADK2_22495 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PADK2_22495 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PADK2_22495 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AFM66762
LinkDB
All DBs
Position
complement(4852770..4854206)
Genome browser
AA seq
478 aa
AA seq
DB search
MNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI
TGITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAR
EWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLEHGQAHDALSDV
RATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVALPL
AWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPV
VAPLSVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLY
DGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQWE
SFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgcgagtattttttggtacgactacgaaaccaccggcatcgaccctcgccgcgac
cggccgttgcagatcgccgggatccgcacggacgaggcgctgaacgagatcggcgagccg
atgaacctgtattgccgtcccagcgacgatatcctgccccaccctatggcttgcctgatc
accggcatcactccccagcggctggccgagcgggggctgtccgaggccgacttcatgacc
cgggtacacgcccagctggcgcagccggcgacctgcgtggccggctacaactccctgcgc
ttcgacgacgaagtgacgcgctacagcctgtaccgcaacttcttcgatccctacgcccgc
gagtggcaaggcggcaatagccgctgggacctgatcgacatggtccgtaccgcctatgcc
ctgcgcccggagggcatccagtggccgcagctggacggccggctgtcgctgaagctggaa
atgctcaccgcggcgaacggcctggagcatgggcaggcccacgacgcgctttccgatgtc
cgcgccaccattgccctggcccgcctgatccgtcagcgccagccgcgcctgtacgattac
ctctaccagttgcgcagcaagcacaaggtgctcgaccaggtacgcctgctgcagccgctg
gtgcatgtctccggacgcttttccgcggagcgccatttcctctcggtggccctgccgctg
gcctggcacccgcgcaaccgcaatgctctgatcgtctgcgacctctgcgccgatcccgcg
ccgctgctggagttgtcggccgaagacttgcgcaggcgcctgtatacccgtcgcgacgaa
ctggccgagggcgagttgccggtgccgctgaagcagatccaggtcaaccgttgcccggtg
gtggcgccgctgtcggtattgcgcgccgaggatcgccagcgaaccggcatcgaactcgag
gagtgccagcgaaaagccgagctgttgcgccagcatcaaaccgtctgggcggacaaactg
acagcgctatatggcgaagaaagtttctccgccagcgacgaccccgagcaacagttgtat
gacggatttattggcgatcgggatcgacgcctttgtgaacagctgcgccttgccgaaccg
gagcaattggccaaagaacaatggcccttcgacgatgcccgtttgcaggagttgttcttt
cgctatcgtgcgcgaaatttcccggaaactttaaatgtggccgagcgccaacaatgggaa
agcttctgccgcaatcgtttgtcccatgaagaatacggcgcaccgaatactttgccggcc
ttcgaggcggcgctggaggcttgtcggcaagagcagggcggcacattgccggcggtactt
gcggcctggcgcgattacgccgcggaactgcgtcaacgctattcgctggagacttga
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