Pediococcus damnosus: ADU72_0268
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Entry
ADU72_0268 CDS
T04321
Name
(GenBank) Ribonuclease J2 (endoribonuclease in RNA processing)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pdm
Pediococcus damnosus
Pathway
pdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ADU72_0268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdm03019
]
ADU72_0268
Messenger RNA biogenesis [BR:
pdm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ADU72_0268
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
BHD_3
Motif
Other DBs
NCBI-ProteinID:
AMV66217
UniProt:
A0A0R2H825
LinkDB
All DBs
Position
complement(104460..106169)
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AA seq
569 aa
AA seq
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MSNSIRIIPFSGVRENGKNMYAVEVNDSIYILDCGLKYPENELLGIDVVIPDFSYLEKHS
DKIVGVFLTHGHADAIGALPYFLDKFPVPVFGSEMTIALAKLNVEKDPKLKQFSDFHIVN
EKMEIDFGDVTVGFFKTTHSIPESLGIVLKTEEGQIVYTGDFKFDQTAAPEYATDFGRLG
QIGADGVLALLSESANDENPKPSTNERDIANYILEAFKYHKGRIIVASVASNILRIQQVL
DAAAQSDRKVVLTGHDLEKIVNTALRLKKLHLPTEDIIVPFNKLDSLDKERTVVLETGKM
GEPIKALQKMSNDPGKGVQIGHGDLVFITTTPSHAMETTVAKTKNMIYRAGGEVKAISDD
LNASGHASKNDLQLMINLLKPKYLIPVQGEYRLLKTHVQLAQEAGMDKDHIFLTQKGDVL
EYKNNEMHLGEGIEVGDTMIDGIGVGDIGNIVLRDRKTLSDDGIFIAVVTIDRKKKIIIG
EPKVTSRGFVYVNNDHDLLKESSSIVTEVVQDNLDNKEFDWGHLKQDIREKISRYLFEQT
KRHPVILPVIMEVNQHHHKVVKKAPEKKA
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatagtattagaataatcccatttagtggggttcgtgagaatggcaagaatatg
tatgccgttgaagtaaatgattccatttacattctagattgtggattaaagtacccagaa
aatgagcttttaggaattgatgttgtcattcctgatttttcttatttagaaaaacatagt
gataaaattgtgggtgtttttcttacccatgggcatgcagacgcaattggcgccttgcct
tactttttagataagttcccagttcctgtatttggttcagaaatgacaattgcactggcc
aaattaaacgttgaaaaagatcctaaattgaagcagtttagtgattttcacattgtaaat
gaaaaaatggaaatcgattttggcgatgtaacagttgggttcttcaagacgacccattct
attcctgaatcattaggaattgtattgaagactgaagaaggccagatcgtttatactggt
gactttaagtttgaccagacagctgctccagaatacgcaactgattttggacgtttgggt
caaattggtgcagatggcgttttagcattattgagtgaatcggctaatgatgaaaatccc
aaaccttcaactaatgaacgtgatattgctaattatattttagaagctttcaaatatcat
aaagggcggatcattgtcgcttctgtggcttctaatattttacgaattcaacaagttctg
gatgccgcggctcaatcagatcgaaaagttgtgttaaccggtcatgatttagaaaaaatt
gtaaatacggcactcagattaaaaaaattacatttacctactgaagatattattgtaccg
ttcaacaaattagatagtttggataaagagcggaccgttgttttggagactggaaaaatg
ggagaaccaattaaggctcttcaaaagatgtccaacgatcccggtaaaggggttcaaatt
ggacatggcgatttagtattcattacaaccacgccatcgcatgctatggaaactactgta
gctaaaacgaagaatatgatttaccgtgctggtggagaagtaaaggcgatttcagatgat
ctgaatgcatctggtcacgctagcaaaaatgatttacaattgatgatcaatcttttaaag
cctaagtacttaattccagttcaaggagagtaccgccttttgaagacccatgttcaatta
gcacaagaagcagggatggataaagatcacattttcttaacccaaaagggcgatgtttta
gagtataaaaataatgaaatgcacttgggtgaaggaattgaagttggcgacaccatgatt
gatggaatcggtgttggtgatatcggtaatattgtcttacgggaccgtaaaactctttcc
gatgatgggatctttattgcagttgtaactattgatcgaaagaagaaaataattattggc
gagcccaaagtaacatcacgtggctttgtttatgtgaataatgaccatgatttattgaaa
gaaagcagcagcattgttacggaagtcgtccaggataaccttgataacaaggaatttgat
tggggtcatttgaagcaggatattcgtgagaagattagtcgttacttgtttgaacaaact
aaacgtcatcctgttattcttccagtgatcatggaagttaatcagcaccatcataaagta
gtgaagaaagcacctgaaaaaaaagcttaa
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