Pediococcus damnosus: ADU72_0301
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Entry
ADU72_0301 CDS
T04321
Name
(GenBank) RecD-like DNA helicase YrrC
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pdm
Pediococcus damnosus
Pathway
pdm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ADU72_0301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdm03400
]
ADU72_0301
Enzymes [BR:
pdm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ADU72_0301
DNA repair and recombination proteins [BR:
pdm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ADU72_0301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
AAA_11
Viral_helicase1
UvrD-helicase
HHH_5
RsgA_GTPase
AAA_22
nSTAND3
DUF815
TsaE
PIF1
AAA_28
AAA
AAA_16
AAA_7
AAA_29
DEAD
HTH_IclR
AAA_17
NPHP3_N
SLFN-g3_helicase
ABC_tran
T2SSE
Zeta_toxin
AAA_12
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AMV66250
UniProt:
A0AAC9FHY3
LinkDB
All DBs
Position
complement(145255..147747)
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AA seq
830 aa
AA seq
DB search
MQNESLNLFDEDSKATGKPTEQFVVGKVSAIFFESPDSFYKVVLIKISETNIDWHEDEIV
VTGSFGDIKEEQAYRFVGKSVTHPKYGMQFQATNYENATPTTKEGLVAYLSGSDFKGVGK
KTAERIVALLGTDAINKIIRDPKVLAPLKLKDTLQTELVNKLNENNGMEQIIIGLNGYGF
GSQLAASIYNRYREQTLDIIHKNPYQLIEDIDGIGFKKADQIAEATGIEFDAPARIDGAV
LTSLSDLSNSNGDTYTDAQSLLKASLSLLEHSRNQAVDPQKVADELLSLAKDNKIVGDEN
RIYLRTLYEAEWQIAEHLKRLQDAKENHHFETSEIDGVIDLAQKQFKITYDDSQRQALRE
AMQAKTFLLTGGPGTGKTTIINGIVKTYATLNEVSLDVNEYHDTPFPVLLAAPTGRAAKR
MSEVTGLPASTIHRLLGLTGREDDPDKETKDLEGGLLIVDEMSMVDTSLFRTLVRAIPNS
MKVILVGDKDQLPSVGAGQIFNDLLQSQEIPKIELSKIYRQDDQSSIIPLAHAIKEGHLP
ADFSQNQKDRSFIPCPTNQVDSVITQVVKKAEQKGFTAQDIQVLAPMYRGIAGIDRLNSS
LQQILNPKKNERTKEVEFRGQLFRIGDKVLQLVNVPENNVFNGDMGIIKGIILAKDKGNT
DKQDKLVIDFDETEVTYGRKDWIQITLAYCTSIHKSQGSEFKMVILPMVQQYSRMLQRNL
LYTAVSRAESLLILLGDERAFERCVQNLAVNRQTTLKKRLITVFEGKQAGEKPVAETNPI
TADSDQKGVTKPKKKASESETVLTLAKAQSQEVDPMIGMNGITPQSFMKA
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatgagtcactcaacttatttgatgaagattccaaggctacagggaaaccaaca
gaacaatttgttgtggggaaagtctccgcaattttttttgagagcccagacagtttttac
aaagttgttttaattaaaattagtgaaacaaatattgactggcatgaagatgaaattgtg
gttactggtagttttggagatatcaaagaagagcaggcctatcggtttgttggaaaatcg
gtgacccatcctaaatacggtatgcagtttcaggcaactaattatgaaaatgctacacca
actacgaaagagggactggtggcctatttatctggttctgattttaaaggcgtagggaaa
aagaccgccgaacgaattgtggcgctgcttggaacggatgcgattaataaaatcatccgt
gacccgaaagtgctggcgccactcaaactaaaagacacattgcaaactgaattagtaaat
aagcttaatgaaaataatggcatggaacaaatcattattggccttaatggctatggattt
ggaagtcaactagcagctagtatttacaatcgttatcgggaacaaacgttagacattatt
cataaaaatccttatcaactcattgaagatatcgatggcattgggtttaaaaaggccgat
caaattgcggaggcaactggtatcgagtttgatgcgccagcaaggattgatggggctgtt
ttaacttctttaagtgacctgagtaattctaatggagatacatatactgatgcccaatca
ttgctaaaagcttccttgtcgctgttggaacacagtcgtaatcaggcagttgatccgcaa
aaagttgctgatgagctgttaagtctggcgaaagacaacaaaattgtgggggatgaaaat
cgcatatacttgcggactttatatgaagctgaatggcaaattgctgagcatcttaaacgg
ctgcaggatgcaaaggaaaaccatcattttgaaacttcagaaattgatggtgtcatcgat
ttagctcagaagcaatttaagattacgtatgatgactcacagcgtcaggctttaagagag
gccatgcaagcgaagacgtttttgctgaccggtggacctggaacaggaaaaacaaccatt
atcaatgggatcgtcaagacgtatgccacgttgaatgaagtttcgttagatgttaatgag
tatcatgataccccatttccggttttattggcggcaccaactggccgagctgctaaacgg
atgagtgaagtaaccggattgcctgctagcaccattcatcgtttgttgggattaacggga
cgcgaagatgatccggataaggagaccaaggacctggaaggtggccttttgattgtggac
gaaatgtccatggtagatacgagtttgtttagaacccttgtccgtgcaattccgaatagt
atgaaagtgattttggtaggtgataaagatcagttaccatccgttggggccggtcaaatt
tttaatgatttattgcaaagtcaggagattccaaaaattgaattgtctaagatctatcgt
caagatgatcaatcctcaattattccgctggctcatgccatcaaagagggtcatttacca
gctgacttcagtcaaaatcaaaaggatcgttcctttattccatgtccgaccaaccaagtt
gatagtgtgattacgcaagtagtgaaaaaagctgaacaaaaaggatttaccgcccaagat
atccaggttctagcacccatgtatcggggaattgcgggaattgaccggctaaatagttct
ttacagcagattttaaatccgaagaaaaacgaacggaccaaggaagttgaatttcgcggg
caacttttccgcattggcgacaaggttttgcaattagtgaacgtccctgagaataacgtt
tttaatggtgatatggggattatcaaaggaattattcttgcaaaggataagggtaatact
gataagcaagataaacttgtaattgattttgatgaaacggaagttacttatgggcgcaag
gattggatccaaatcacattggcttactgtacatcaatccataaatcacagggtagtgag
tttaaaatggtgattttaccaatggttcagcagtattcacggatgctgcaacgaaacttg
ttatataccgcagtttcgcgggcagaatcacttttaattcttttgggggatgaaagagct
tttgaaagatgtgttcaaaacttggccgtaaatcggcaaacaacgttaaaaaaacggtta
atcactgttttcgagggtaaacaagctggagaaaagccagttgcagaaacaaatccgata
acagccgattctgaccaaaaaggagtaacaaagcctaagaaaaaagcttctgaatcagaa
acagttttgacgttagccaaggcccaaagccaagaagtggaccccatgattgggatgaat
ggaattactccacaaagttttatgaaggcttaa
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