Pediococcus damnosus: ADU72_0434
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Entry
ADU72_0434 CDS
T04321
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pdm
Pediococcus damnosus
Pathway
pdm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pdm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ADU72_0434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdm03021
]
ADU72_0434
03400 DNA repair and recombination proteins [BR:
pdm03400
]
ADU72_0434
Enzymes [BR:
pdm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ADU72_0434
Transcription machinery [BR:
pdm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ADU72_0434
DNA repair and recombination proteins [BR:
pdm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ADU72_0434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AMV66383
LinkDB
All DBs
Position
complement(272188..275595)
Genome browser
AA seq
1135 aa
AA seq
DB search
MEVTKSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDMSPRALEEIIYFASYVVIDP
GKTPLEKKQLLTEREYREKLSEFGNKFNAKIGGEAIKELLQDVDLNKEAKTLKEELKDVS
GQKRTRAVRRLDIIEAFIKSGNEPDWMVMDAIPVIPPDLRPMVQLDGGRFATSDLNDLYR
RVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGRRGRPVAGPGNRPLKSLSHM
LKGKQGRFRQNLLGKRVDYSGRSVIDVGPSLKMNQMGLPVPMALELFKPYIMKELVSRGL
ASNIKNAKRKIDRKDDDVYDVLEDVIKEHPVLLNRAPTLHRLGIQAFEPVLVSGKAMRLH
PLVCEAYNADFDGDQMAIHLPLSDEAQAEARLLMLAAHHILAPANGKPVVTPSQDMVIGN
YWLTMERKNSNGEGMIFKDLNEIRLAMQNGYVSEHTRIGLQVSYMPKKPFTTDEQRHQIL
VTTVGKAIFNDILPAGLIYLNEPTDENLVDGIPDKYFLKSGEDIHAFIKDQPLISPFKKG
FLSDIIAQVYKQYKVTETSLLLDRMKDLGYDVSTKSGLTVGIADITDLKEKPEIVDAAHK
QVATVTKQFRRGLITDDERYERVVGIWNDAKDAIQQKLMESFDPQNPIYMMSDSGARGNI
SNFTQLAGMRGLMAAPNGKIMELPIISNFREGLSVLEMFISTHGARKGMTDTALKTANSG
YLTRRLVDVAQDVIVREKDCGTDRGLTISSIVDGNEVIESLYDRILGRYTQKSVYNPDTG
EKIIGKNEMIEEDAAQKIIDAGVDKVTIRSAFTCNTSHGVCERCYGRNMSTGDRVEVGEA
VGTVAAQSIGEPGTQLTMRNFHTGGVAGNEDITQGLPRIQEIVEARNPKGRAEITEVTGT
VESIEENPAERTKDITIKGETDTRTYTLPITARMKLAEGDFVHRGSALNEGSIDPKEMLK
VRDVLSTETYLLSEIQRVYRMQGVEILDKHVEIMVRQMLRKIRVMDPGDTDMLPGTLLDI
NDFKDANYKTLIAGGIPATARPVLLGITKAALETNSFLSAASFQETTRVLTDAAIRGKND
PLVGLKENVIIGKIIPAGTGMPDYRKIIPKAVGGKVAEPKSLSDVQKEMDTETSK
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
gtggaagttactaaatcaaaagttcgtcgtgaacgaatgggtcatattgaattagctgct
cctgtcacacatatctggtactttaaaggaatcccaagccgaatgggccttgtcttagac
atgagtcctcgggctcttgaagaaattatctattttgcttcatacgtcgtaattgatcct
ggtaaaacacctttagaaaagaaacaattactaactgaacgtgaataccgagaaaaatta
agtgaatttggaaataaattcaatgccaaaattggtggcgaagcaatcaaagaacttctt
caagatgttgatcttaataaagaagccaaaacattaaaagaagaattaaaggatgtctct
ggccaaaaacggactcgtgccgtccgtcgtttagatatcattgaagcctttatcaaatct
ggaaatgaacctgactggatggtaatggatgccattccggttattccaccggatttacga
ccaatggtgcaattagatggtggtcgttttgctacatctgatttgaatgatttatatcgc
cgggtaattaaccgtaacaaccgtttgaaacgtttgttagatcttaatgctcctggaatc
attgttcaaaatgaaaaacggatgttgcaagaggctgttgatgccttgattgataatggg
cgtcgtggtcgtcctgttgctggaccaggtaatcgtccattgaaatctctttcacacatg
ttgaaaggaaagcaaggacgattccgtcagaacttacttggtaaacgagttgattattct
ggccgttccgttattgatgtgggtccttcattgaagatgaaccaaatgggcttaccagtt
ccaatggctttggaattattcaaaccatatattatgaaggaattggtttcccgcggtttg
gcttcaaacattaaaaatgcaaaacgcaagattgaccgcaaagatgatgatgtttatgat
gttttggaagatgttattaaagaacatccagttcttttaaaccgtgcacctactttgcat
agacttggaattcaagcctttgaaccagttttggttagtgggaaagcgatgcgtttgcat
ccattagtttgtgaagcttacaatgccgattttgatggtgatcagatggctattcatttg
ccattatcagatgaagcacaagctgaagctcgtttgcttatgttggctgctcatcatatt
ttggcacctgcaaatggtaaaccagttgtaaccccatctcaggatatggttattggtaac
tactggttaacaatggaacgtaaaaatagcaacggcgaaggcatgatcttcaaagacctt
aatgaaattcgtttagctatgcaaaatggttatgtttctgagcatacccgaattggtttg
caggtaagctacatgcctaaaaagccatttacgacggatgaacaacgtcatcaaatcttg
gtaacaacggttggaaaggcaattttcaacgatatcttgccagctggtttaatttacttg
aatgaacctacagacgaaaacttagtagatggaatcccagataagtacttcttgaagtcc
ggtgaagatattcacgccttcattaaggatcaacctttgatttcaccattcaaaaaagga
tttttgagtgacattattgcacaagtttacaagcaatataaggttacagagacttctttg
cttttggatcgtatgaaggatcttggatatgatgtttcaacgaaatctggtttaacagtc
ggaattgctgatattactgacttgaaggaaaaaccagaaattgttgatgctgctcataaa
caagtagcaacagttacgaaacagttccgtcgtggtttaattactgatgatgaacgttac
gaacgagttgtgggaatttggaacgatgctaaagatgccattcaacaaaaattgatggag
agttttgatcctcaaaacccaatttatatgatgagtgattctggtgctcgtggtaacatt
tctaactttactcagttagctggtatgcgtggattgatggctgctcctaacggtaaaatc
atggaattgcctatcatttcaaacttccgtgagggactttctgttttggaaatgttcatt
tcaactcatggtgctcgtaaaggtatgactgatacggctcttaagacggctaactcaggt
tacttaactcgtcgtttggttgatgtggctcaagacgttattgtccgtgaaaaagattgt
ggaaccgatcgtgggttaacaatttcatcaattgttgatggtaatgaagtgattgaatcc
ttgtatgaccggatcttaggtcgttacacgcagaagtcagtttataatcctgatacaggt
gaaaagatcattggtaagaatgaaatgatcgaagaagatgctgcccaaaagattattgat
gccggtgttgataaagttacaattcgttcagcatttacatgtaacacaagtcatggtgtg
tgtgaacgttgttatggtcgtaatatgtcaaccggtgaccgtgtcgaagttggtgaagca
gtcggaactgttgctgctcaatcaattggtgaacccggaacccagcttactatgcgtaac
ttccatactggtggtgttgctggtaacgaagatattacccaaggacttccacgtattcaa
gaaattgtggaagcacgtaatcctaaaggtcgtgctgaaattactgaagttacaggaacc
gttgaatcaattgaagaaaatcctgctgagcgtactaaagatattacgatcaagggtgaa
actgatacacggacctatactttaccaattacagctcgtatgaagcttgcagaaggtgac
tttgttcatcgtggttcagcattgaatgaaggttcaattgatcctaaggaaatgttgaaa
gttcgtgatgttctctcaactgaaacatacttgttgagtgaaattcaacgtgtttatcgt
atgcaaggtgttgaaatcttggataagcatgtggaaatcatggttcgtcagatgcttcgt
aagattcgagttatggatcccggcgatactgatatgcttcctggtacattgttagacatc
aatgatttcaaagatgctaactacaagactttgattgccggtggcattccagcaactgct
cgtcctgttttacttggaattactaaagctgctttggaaacaaatagtttcttgtcagct
gcttcattccaggaaacaacgcgagtactaactgatgctgcaattcgtggtaagaatgat
ccacttgttggtttgaaggaaaatgtcattattggtaagatcattcctgctggaacaggg
atgcctgattatcgtaagattattcctaaggctgttggtggaaaagtggcagaaccaaag
tcacttagtgatgttcaaaaagaaatggatacagaaacatctaaataa
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integrated database retrieval system
