Pediococcus damnosus: ADU72_1490
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Entry
ADU72_1490 CDS
T04321
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pdm
Pediococcus damnosus
Pathway
pdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ADU72_1490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdm03019
]
ADU72_1490
03009 Ribosome biogenesis [BR:
pdm03009
]
ADU72_1490
Enzymes [BR:
pdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ADU72_1490
Messenger RNA biogenesis [BR:
pdm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ADU72_1490
Ribosome biogenesis [BR:
pdm03009
]
Prokaryotic type
rRNA helicases
ADU72_1490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
RRF
Helicase_RecD
Cystatin
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
AMV67417
LinkDB
All DBs
Position
1432743..1434305
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AA seq
520 aa
AA seq
DB search
MKFTDFELSDDLQKTIKESGFEEPTPIQAQTIPHVLAGKDIIGQAQTGTGKTAAFGLPIL
EHVDVNDPNVQALVVSPTRELAIQTQEELYRLGRAKHVKVQVVYGGADIRRQIKNLKSHP
QIIVGTPGRLLDHIRRHTVKLEHVQTLVLDEADDMLDMGFLPDIESIISETPADRQTLLF
SATMPPAMKKIGVKFMTDPEQVTVKSKELTTDLVDQYYIKSKEFEKFDMLTRILDVQTPK
LALVFGRTKRRVDEVSRGLEARGYNAAGIHGDLTQQRRSSILQKFRNGQISILVATDVAA
RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGAHGVSVTFVTPWEMDYLRDIEKLIKK
RLLPLKPPTDDEALQGRIKLAEDAIDTLVKSTKEEKFSDQTKELLEKYTPEQLAAALLNS
ETKSDSSQVKVKITPERPLPNHKGGKGHGGGGHRGGGYRGKRRSNSSSSYRGGRGNNRDN
YGKSSDRSHGNYKKNNSNGSNNGGNRHSSSNRKFTIREHN
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttacagattttgagttatcggatgatttgcaaaaaaccatcaaagaaagtggt
tttgaggaacctaccccgattcaagctcagacaattccccatgttttggctggcaaagat
attattggtcaggcccaaacaggaacgggaaaaacagccgcattcggcttacctatttta
gagcatgttgatgtaaatgaccctaatgtacaagcattagttgtttcaccaacgcgtgaa
cttgccattcaaacacaagaagaactttaccgtttaggtagagcaaaacatgttaaagtg
caagttgtatatggtggtgccgatattcgtcgccaaatcaagaatttaaagagccatccc
caaattattgttgggacacctggtcgtttattagatcatattcgtcgtcatacagttaaa
ttggagcacgtccaaacattagttttggacgaagctgatgatatgttagatatgggattc
ttacctgatatcgaatctatcatttccgaaacaccagccgatcgtcagactttattgttc
tcagcaacaatgccaccagctatgaaaaagattggtgttaagttcatgacggatccagaa
caagtaacggttaaatcaaaagaattaactactgacttagtggatcaatattatattaaa
tcaaaagaatttgaaaaatttgatatgttgactcgtattttggatgttcagacacccaaa
ttagctttggtgtttggtcgtacaaagcgtcgtgttgatgaagtttcccgtggattagaa
gctcgtggctataatgctgctggaattcatggtgatcttacccaacaacgtcgttctagt
attttacaaaagttccgaaatggtcaaatcagtattttagttgcaactgatgtcgcagct
cgtggacttgatatttcgggagttacccatgtttataactatgatattccccaagatcct
gacagttatgtccatcgaattggccgtacaggccgtgccggagcacatggtgtttcagtt
acttttgtaactccttgggaaatggattatcttcgtgatattgaaaagcttattaagaag
cgcttgcttccacttaagccaccaacagatgacgaagctttacagggccgtataaaactt
gctgaagatgctattgatactcttgttaagagcacgaaggaagaaaaattcagtgatcag
accaaggaattgcttgagaaatacacacctgaacaattggctgcagccttacttaatagt
gagaccaagagtgattcaagccaagttaaggtaaaaatcacacctgaacgcccattacca
aatcataagggcggcaagggtcatggtggtggcggccatcgtggcggtggttatcgtggt
aagcgccgtagcaacagtagcagcagctatcgtggcggtcgtggtaataaccgtgataat
tatggcaaatcatcagatcgtagccatggtaattacaagaagaataatagtaatggtagc
aataacggtggaaatcgtcattcttcatcgaatcgtaaatttaccattcgcgaacataat
tag
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