Pediococcus damnosus: ADU72_1635
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Entry
ADU72_1635 CDS
T04321
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
pdm
Pediococcus damnosus
Pathway
pdm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ADU72_1635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdm03400
]
ADU72_1635
DNA repair and recombination proteins [BR:
pdm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ADU72_1635
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ADU72_1635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_21
RsgA_GTPase
nSTAND1
nSTAND3
AAA_22
AAA_23
AAA_33
AAA_14
AAA_18
Viral_helicase1
DnaJ_CXXCXGXG
APS_kinase
MMR_HSR1
AAA_24
cobW
NACHT
YobI-ATPase
Septin
PRK
NB-ARC
MeaB
Carot_N
DUF87
IIGP
NTPase_1
Dynamin_N
DUF463
FtsK_SpoIIIE
DUF5975
ExoX-like_C
T2SSE
Motif
Other DBs
NCBI-ProteinID:
AMV67560
LinkDB
All DBs
Position
1595776..1598643
Genome browser
AA seq
955 aa
AA seq
DB search
MANDKIVIHGARAHNLKNINVTIPKNKMVVITGLSGSGKSSLAFDTLYAEGQRRYVESLS
AYARQFLGQMDKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLWARVGHP
ICPNDGTPITSQSVEQMVNQVLALPERTKLQIMSPIVRQKKGQHKKIFEKIKREGFVRVR
VDGEIHDIEEELDLNKNKMHTIEIVIDRIVVKEGIRSRLFDSFEAALRLSGGYAMADIID
GEPILFSEHYACPVCGFTVGELEPRLFSFNAPFGACPDCDGLGVKLEVDLDLVVPDPSKT
LREGALAPWNPISSQYYPSLLEQACDAFKIDMDTPFEKLSKDQQDFVLYGSKGKKFHFHY
ESDFGGVRDVDAAFEGVINNVDRRYRETNSDFTRDVMRGYMRELTCQTCHGYRLNRKALS
VKVMGKHIGEVSELPINDAMDFFNHVELSEQETTIAKPILKEIRDRLTFLKNVGLEYLTL
SRSSRTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIGSLKKMRDLGNT
LIIVEHDEDTMRAADYLIDVGPGAGANGGEIMAAGTPAEVEKVPTSLTGQYLAGKKFVPV
PLKRRKGNGKKITIKGAAENNLKNINVDFPLGKFIAVTGVSGSGKSTLINTILKRALAQK
LNHNSEKPGKYRSISGVKNIEKIINIDQSPIGRTPRSNPATYTSVFDDIRGLFAQTNEAK
LRGYKKGRFSFNVKGGRCEACKGDGILKIEMNFLPDVYVPCEVCKGKRYNSETLEVKYKG
KSIADVLEMTVEEALDFFEAIPKIRRKLQTIVDVGLGYVQMGQSATTLSGGEAQRMKLAA
ELHKQSAGKSFYILDEPTTGLHTDDIKRLLQVLQRLVDKGNTVLVIEHNLDVIKTADYLI
DLGPEGGAGGGSIVATGTPEHVAEVKESYTGQYLKPVLERDKKRTTEVSATEKKI
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaatgataaaattgtcatccatggcgcgcgtgcacacaatttaaagaatattaat
gtaacgattccaaagaataaaatggttgtgatcactggtttatctggttctggtaaaagt
tcattagcctttgacaccctatatgctgaaggacagcgtcggtacgttgaaagtttgtcg
gcgtatgcacgacagtttttgggtcaaatggataaacctgatgttgattcaattgacggc
ttaagtccggcaatttcaattgatcaaaaaacaacttcaaaaaatccccgttctacggtt
ggaaccgtgacagaaataaatgattacttgcgacttttgtgggcgcgagtaggacatcca
atttgtccaaacgatgggacgccaattacgagccaatctgttgagcagatggttaatcag
gtattggcattgccagagcggaccaaattgcaaattatgtcgccaattgtgcgtcaaaaa
aaagggcaacacaaaaagatttttgaaaaaataaagcgtgaaggctttgttcgtgtacga
gttgatggtgagattcatgatattgaagaagagcttgatttaaataagaacaaaatgcat
accattgaaattgtgatcgacagaattgtggttaaagaaggaattcgatcacgtttattt
gattcatttgaagctgcactacgattaagtggtgggtatgcaatggctgacattattgat
ggagagcccattttattttctgaacattatgcatgcccagtttgtgggttcacagttggt
gaattagagccacgattgttttcgtttaatgcgccatttggagcttgtccggattgtgac
gggttaggagttaagcttgaggttgatttggatttagttgtgccggatccaagcaagact
ttacgagaaggagcattggcgccatggaatccaattagttctcagtactatccgagcttg
ttggaacaggcctgtgatgcattcaaaattgatatggatacgccatttgaaaaattgagt
aaggatcagcaagactttgtcctttatggatcaaaaggtaaaaaattccattttcattat
gaaagtgattttggtggtgttcgggatgtcgacgcggcttttgaaggtgtaattaataat
gtggatcgccgctatcgcgagactaacagtgattttacccgggatgtcatgcgtggttat
atgcgtgaactgacttgccaaacctgccatgggtatcggttaaatcgcaaagccttaagt
gttaaagttatgggtaaacatatcggagaagtatcggaattgcctattaatgatgcaatg
gatttctttaatcatgttgaattatctgagcaagaaacaaccatcgcaaaaccaattttg
aaggaaatccgagatcgtttgacctttcttaaaaacgtgggtctagagtacttaacttta
agtcgttcctcacgaaccctatcggggggagaagctcaacgaattcgattagctacgcag
attggttctaatttatctggcgttttgtatattcttgatgagccttcaattgggcttcat
cagcgagacaatgatcgattaattggatctttaaaaaagatgcgtgatcttgggaacacc
ttaattattgttgagcatgatgaagatacgatgcgagccgccgactatttgattgatgtt
gggccaggggctggtgccaacggtggtgagattatggctgccgggacgccagcagaagtt
gaaaaagtgcccacgtcattaactgggcaatatttagctggtaaaaagtttgtaccggtt
cccttaaaacgtcgtaaaggtaatggtaaaaaaattacgattaaaggtgcagctgagaat
aatttaaagaatattaacgttgattttccacttggcaaatttattgccgtgactggcgtg
tctggttcgggtaagtcgacacttattaatacgattttaaaacgggcgttggctcagaaa
cttaaccataattccgagaaacctgggaaatatcgatcaatctctggcgtaaagaatatt
gaaaaaattattaatattgatcaaagtccaattgggagaacgccacgaagtaatcccgca
acttataccagtgtctttgatgacattcgtggcttatttgcacaaacaaatgaagccaaa
ttgcgtggatataaaaaagggcgatttagtttcaatgttaagggtggtcgttgtgaagca
tgcaagggcgatggaattcttaaaattgaaatgaactttttaccggacgtttatgtgcct
tgtgaagtttgcaaaggaaaaagatataactcagaaacacttgaagtgaaatacaaaggt
aaaagcattgcggatgtcttagaaatgaccgtggaagaagctttagatttctttgaagca
attcctaaaattcgacgaaaactccaaacaattgtcgacgttggtcttgggtacgtacaa
atgggacaatcggcaaccacgttatctggtggtgaagctcagcgcatgaagttggctgct
gaattgcataaacagtctgctggcaagagcttttatattctggatgaacctacgactggg
ttacacacggatgatatcaagcgattgttgcaagttttgcagcgacttgttgataaaggc
aatactgttttagttattgaacacaacttagatgtgattaaaacggccgattatttaatt
gatcttggtccagaaggcggtgctgggggtggctcaattgttgcaactggaacaccagaa
catgtggctgaggttaaagaaagttatacaggtcaatacctaaaaccggtattagaacgt
gataagaaaagaactacagaggtttcagcaactgagaaaaaaatatag
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integrated database retrieval system
