Pediococcus damnosus: ADU72_2107
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Entry
ADU72_2107 CDS
T04321
Name
(GenBank) Ribonuclease J1 (endonuclease and 5' exonuclease)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pdm
Pediococcus damnosus
Pathway
pdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ADU72_2107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdm03019
]
ADU72_2107
Messenger RNA biogenesis [BR:
pdm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ADU72_2107
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AMV68028
UniProt:
A0A0R2H390
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All DBs
Position
2108388..2110073
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AA seq
561 aa
AA seq
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MRKLKVKNNEVAVYAVGGLGEIGKNMYCVQYQDEIVIIDCGIKFPEDELLGVDYIIPDYQ
FLIENQKKIKALVITHGHEDHIGGIPFFLQKLNVPIWAGPFASELIKGKLKEHNLLRTTE
LHELQEDTVLKFRKLSVSFFRTTHSIPDTLGIAVHTPQGTVVQTGDFKFDLTPVGNLPSP
NFQKMAEIGGKDCLLLMSDSTNAERPTFTKSERFVEKSIKRIFTEIQGRIIFATFASNVY
RVREACEAALEQGRKIAIFGRSMENAIEAGQKLGYLNIPEEALVDAQELHNLPANKLMIL
CTGSQGEPMAALSRIANGTHRQISLQPDDTVVFSSNPIPGNTVSVNNLINKLDEAGVTVI
HGKVNNIHTSGHGGQEDQKLMLRLIKPKFFMPCHGEYRMQMIHAKLAEQTGIPEDNCFIM
KNGDVLALTRDSARIADHFSAGDVYLNDADINDNVSSQILSDRTILASEGVVTAVATINV
KKHRITAGPDTISRGFIYMRESNELIHDTNKAAFSSLLNTMKKKSHPTEKDFNNNIIDDL
QEFLYQKTERSPMIVPMLIFE
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaattaaaagttaaaaacaacgaagtggcggtttatgccgttggtgggttagga
gaaatcggtaaaaatatgtactgcgtccagtatcaggacgaaattgtgatcattgattgc
gggatcaaatttcctgaagatgagttattaggcgtcgattatattattccagattatcaa
ttcttgattgaaaatcaaaagaaaattaaagctttggttattacccatgggcacgaagat
catatcggtggaattccattctttttgcaaaaattaaatgtgccaatttgggcaggacca
tttgcatcagaattaattaagggtaagttgaaagaacataacttattacggacaaccgaa
ttacatgagttacaggaagatactgttttgaaattccggaagttatctgtgtcatttttc
aggactacgcattcaattccagacactttagggattgcggttcacactccacaaggaacc
gttgtacaaacaggtgactttaagtttgatctaactccagttggaaacttaccatctcca
aatttccaaaaaatggcggaaatcggcggaaaagattgtttgcttttgatgtctgatagt
acaaatgcagagcgtccgacctttacaaagtctgagcggtttgttgaaaaaagtatcaaa
cggattttcactgaaattcaagggagaattatttttgcgacatttgcttctaatgtgtac
cgagtacgagaggcttgtgaagctgccttagaacaaggaagaaaaattgctatttttggt
cggagtatggaaaatgctattgaagccggacaaaaattaggatatttaaatatacctgaa
gaagctttagtggatgctcaggaattacataatttgccagctaacaagttgatgatttta
tgtactggatcacagggtgaaccgatggcagctttgagccggattgccaatggaactcat
cgacaaattagtttgcaacctgatgatacggttgtattttcaagtaatcctatcccagga
aatactgtcagcgtaaataatctaattaacaagttagacgaagcaggcgttacggttatt
catggtaaggtaaacaatattcatacttctggccatggtggtcaagaagatcagaagttg
atgttacgtctgattaagccaaaattctttatgccttgtcatggggagtataggatgcag
atgattcatgccaaacttgctgaacaaacgggaattcctgaagataattgtttcattatg
aaaaatggtgatgtgttggctttaacccgagatagcgcccgaattgcagatcatttcagt
gctggtgatgtgtacttaaatgatgctgatattaatgataatgttagttcacagatttta
agcgatcgcacaattttagcaagtgaaggcgttgtgacggctgttgcaacgattaatgtc
aagaaacatcgaatcaccgctggaccagatacaatttctagaggttttatctacatgcgt
gaatcgaatgaattaattcatgatacaaataaggcggcttttagttcattactaaataca
atgaaaaagaaatcgcatccaactgaaaaagactttaataataatattattgatgacctt
caggaatttttatatcagaaaactgaacgtagtccgatgatcgtacctatgcttattttt
gaatag
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