Prevotella denticola: HMPREF9137_0057
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Entry
HMPREF9137_0057 CDS
T01459
Symbol
uvrB
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
pdn
Prevotella denticola
Pathway
pdn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF9137_0057 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdn03400
]
HMPREF9137_0057 (uvrB)
DNA repair and recombination proteins [BR:
pdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF9137_0057 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HMPREF9137_0057 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_5
AAA_22
AHH
AAA_16
AAA_7
DUF87
Motif
Other DBs
NCBI-ProteinID:
AEA19910
LinkDB
All DBs
Position
64973..67018
Genome browser
AA seq
681 aa
AA seq
DB search
MNFKLTSKYRPTGDQPEAIRELTDGLERGDKSQVLLGVTGSGKTFTVANVIANVNKPTLI
LSHNKTLAAQLYEEMKAFFPDNAVEYYVSYYDYYQPEAYMPTTDTYIEKDLAINDEIDKL
RLSAVSSLLSGRKDVIVVSSVSCIYGMGAPVAMKENVIPVRKGQTVDRNDFLRRLVDALY
MRNDIDLQRGNFRVKGDTVDIAMAYNDNVLRITWWDDEIDTIEEVDSVDFHRIASFDDYE
IYPANLFVTSKEQTENAIRQIQDDLVKQVDFFKGIGDNIKAQRIKERVEYDMEMIKELGH
CSGIENYSRYFDGRQAGQRPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKTNLV
EYGFRLPAAFDNRPLRFEEFHSLIHQVIYVSATPADYELKEAEGVVVEQLIRPTGLLDPE
IEVRPSENQIDDLMNEIVVRAEKEERVLVTTLTKRMAEELTEYLLNHDIRTAYIHSDVAG
LDRIAIINDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRA
ARNIHGKVIMYADNITESMQKTIDETIRRRTKQLKYNEEHHITPKQIVRAIKGTLPAGSE
GNTTSQTASIARKTGQAYVEPDNGMLFAADPVITKMNRAQLVKSIENTTALMKQAAKDLD
FLQAAQYRDEIIRLQKELETK
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcaaactaacatcgaaataccgaccgaccggcgaccagccagaagccatccgc
gaactgacggacgggctggaacgcggcgacaagagccaggtgctgctgggcgtgacgggt
tcaggcaagacctttacggtcgcaaacgtaatcgccaacgtcaacaagccgacgctgatt
ctctcgcacaacaagacactggccgcacagctctatgaggagatgaaagcctttttcccc
gacaatgccgtggaatattatgtctcttattacgactactaccagccggaggcgtatatg
ccgacgacggacacctatatcgagaaagaccttgccatcaacgacgaaatcgacaagctg
cgcctgtccgccgtttcctcgctgctgtcaggccggaaggacgtgatagtcgtgtcttcc
gtctcctgcatctacggtatgggggcacctgtagccatgaaggagaatgtcattcctgtc
aggaaagggcagaccgtcgaccgcaatgactttctgcgccggctggtggatgccctctat
atgcgcaacgacatagacctgcagcgcggcaatttccgtgtcaagggcgacacggtggac
attgccatggcgtacaatgacaacgtgctgcggattacgtggtgggacgacgagatagac
accatagaggaagtcgactccgtcgacttccaccgcattgcctcctttgacgattatgag
atctatcctgccaatctcttcgtcacttccaaggaacagaccgagaatgccatccgccag
atacaggacgacctcgtgaagcaggtggacttcttcaagggcatcggcgacaacatcaag
gcgcagcgcatcaaggaacgtgtggaatacgacatggagatgatcaaggagctgggccac
tgctcgggcatcgaaaactactcacgttattttgacggcaggcaggcggggcagcgtcct
tactgtctgctggacttcttccccaaggattatctgatggtcatcgacgagagccacgtg
agcgtaccgcagatttccgccatgtacggcggcgaccgtgcccgcaagaccaacctcgtg
gagtacggcttccggcttccggccgccttcgacaaccggccgctgcgcttcgaggagttc
cacagccttatccatcaggtcatctacgtgtcggccaccccggccgactatgagctgaag
gaagctgaaggcgtcgtcgtcgaacagctcatccgtcctacggggctgctcgacccggaa
atagaggtgcggccctcggagaaccagatagacgacctgatgaacgagattgtcgtccgt
gccgagaaggaagaacgtgtactcgtcacgacactgaccaagcgaatggccgaagaactg
acggaatacctgctgaaccacgacatccggacggcctatatccacagcgacgtggccggc
ctggaccgcatcgccatcatcaacgatctccgggcgggcgtctatgatgtcctggtgggc
gtgaacctgctccgcgaaggtctggacctgcccgaggtgtcgctcgtggccattctcgat
gccgacaaggaaggcttcctgcgcagtcacagaagtctgacgcagacggccggacgtgcc
gcacgcaacatacacgggaaggtcatcatgtatgccgacaacattacggagagcatgcag
aagaccatcgacgagaccatacggaggcgcacgaagcagctgaaatacaacgaggagcac
cacatcacaccgaaacagatcgtcagagccatcaagggaacactgccggcaggcagcgaa
ggaaatacgacttcgcagacggcatccatcgccagaaagacaggacaggcatacgtcgaa
cccgacaacggcatgctttttgccgctgatccggtcatcaccaagatgaacagggcacag
ctggtgaagagcatcgagaacacgacagccctcatgaagcaggcggcaaaggatctcgac
ttccttcaggcggcacagtaccgtgacgaaatcatccggctgcagaaagaactggaaacg
aagtaa
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