Prevotella denticola: HMPREF9137_0262
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Entry
HMPREF9137_0262 CDS
T01459
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pdn
Prevotella denticola
Pathway
pdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF9137_0262 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdn03019
]
HMPREF9137_0262 (recQ)
03400 DNA repair and recombination proteins [BR:
pdn03400
]
HMPREF9137_0262 (recQ)
Enzymes [BR:
pdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF9137_0262 (recQ)
Messenger RNA biogenesis [BR:
pdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMPREF9137_0262 (recQ)
DNA repair and recombination proteins [BR:
pdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HMPREF9137_0262 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecQ-1-like_HTH
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
HTH_40
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AEA20843
LinkDB
All DBs
Position
complement(291996..294179)
Genome browser
AA seq
727 aa
AA seq
DB search
MTQDVNLTGKLKHYFGFDKFKGDQEAIIRNLLAGHDTFVLMPTGGGKSLCYQLPSLIMEG
TAIVVSPLIALMKNQVDVINGISEEDGVAHYLNSSLKKAEVDQVRADIVSGHTKLLYVAP
ESLNKEENIAFLRSVKISFYAIDEAHCISEWGHDFRPEYRKIRHAIDAIGVAPVIALTAT
ATDKVRTDIVRSLGIEDCVEFKSSFNRPNLYYEVRAKKSDDDTDRQIIKFIKQHAGKSGI
IYCLSRKKVEELAAVLQANDIKAAPYHAGLDSETRSRTQDDFLMEELDVIVATIAFGMGI
DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGLCIVFYSKKDLNKLEKFMEGKPVAEQ
DIGRQLLQETEAYAESSVCRRKMLLHYFGEDYPKDNCGMCDNCLHPKKKIEGQKQLLMVL
QAVKVLKENFRQEYVIDFVRGRATDDQKDHRHDELEEFGAGEEEDPKIWSPVVRQALLAG
YLKKDVENYGLLKLTAAGRRFMKSPESFMIVMDTEFKDEYEDDEPMAGTAVLDPELFSML
KTLRRKIARKLEIPPYVIFQDVSLEQMAMMYPVNEQELQNIQGVGAGKAKRYGKEFCELI
KQHCEENHIERPEELRVRTVAKKSMQKVKIIQSIDRQLPLDDIATAEGLDFDDLLTKIEE
IVYSGTKLNIDYFLEEVYDEEQIDDIYDYFMDSETDSIETAMEELDGDYSEVEIRLVRIK
FLSEMAN
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgacacaggacgtcaatcttaccggaaaacttaagcattactttggctttgacaagttc
aaaggcgaccaggaggctatcatccgcaatcttcttgccggacacgacactttcgtgctg
atgccgacaggcggcggaaagagcctctgctatcaactcccctcattgatcatggagggc
acggcgattgtcgtctctccgctcatcgccctgatgaagaatcaggtggatgtcatcaac
ggcatcagcgaggaggacggtgtggcgcattatctcaactcttccttgaagaaggccgag
gtcgaccaggtacgtgcggatatcgtctcgggtcatacgaaactgctttatgtcgctccg
gagtcactgaacaaggaggagaacattgcattcctgcggtcggttaaaatcagcttctac
gccattgacgaggcgcattgcatctcggaatggggacatgacttccgtccggagtaccgc
aagatacgccatgccattgatgcgatcggcgttgctccagtcatcgcacttacggcgacg
gctaccgacaaggtgcgtacggacatcgtgcgcagtctgggcattgaggattgcgtggag
ttcaagagttccttcaaccgtccgaacctgtactacgaggtgcgggcgaagaagagcgac
gacgataccgacaggcagatcatcaagttcatcaagcagcatgctggcaagagcggtatc
atctactgcctgtcgcgcaagaaagtggaagaactggccgccgtcctgcaggccaatgac
ataaaggccgcaccctatcatgccgggctcgactccgagacacgctccaggacacaggac
gacttcctcatggaggaactggatgtcattgtggcaacgattgctttcggtatgggaatc
gacaaaccggatgtgcgtttcgtaatccattatgacattccgaagagccttgaaggttat
taccaggagaccggccgtgccggacgcgacggagaagaggggctctgcatcgtgttctac
tccaagaaggacctgaacaaactggagaagttcatggaggggaagccggttgccgaacag
gacatcgggcggcagctactgcaggagacggaagcctacgccgagtcgtctgtctgccgc
aggaagatgctgctgcattatttcggagaggattatccgaaggacaactgtggaatgtgc
gacaactgcctgcatcccaagaagaagattgagggacagaagcagcttctgatggttctc
caggcggtcaaggtgctgaaggagaacttcaggcaggaatacgtcatcgactttgtaagg
ggaagggctaccgacgaccagaaagaccacaggcatgacgagctggaagagttcggtgcc
ggcgaggaagaagatccgaagatatggagtcctgtcgtccggcaggctttgctggccgga
tacctgaagaaggatgtcgagaactacggactgctgaaactgacggctgccgggcggcgg
tttatgaagtcgccggaatcgttcatgattgtcatggacaccgagttcaaggatgagtat
gaagacgacgaaccgatggcgggtacggctgtcctcgacccggagcttttctccatgctg
aagacgctgcgccggaagattgcccgtaaactggaaatccctccttacgtgattttccag
gatgtttctctggagcagatggcgatgatgtatcctgtcaacgaacaggagctgcagaac
atacagggagtaggtgccggcaaggcgaaacgttacggaaaggagttctgcgaactgata
aagcagcattgtgaagagaaccacattgagcgtcccgaggagctgcgtgtcaggacggta
gccaagaagtctatgcagaaggtcaagattatccagagcatcgaccgtcagctgccgctc
gacgatattgccacggcggagggactcgacttcgacgatctgcttacgaagatcgaggag
attgtctatagcgggacgaaactgaacatcgattacttcctcgaggaggtgtatgatgag
gagcagattgacgacatctacgattacttcatggacagtgagaccgacagcatcgagacg
gcaatggaagaactggacggggactacagtgaagttgaaatccgtcttgtccgcatcaag
ttcctttctgaaatggccaactga
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