Prevotella denticola: HMPREF9137_0656
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Entry
HMPREF9137_0656 CDS
T01459
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pdn
Prevotella denticola
Pathway
pdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF9137_0656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdn03019
]
HMPREF9137_0656
03009 Ribosome biogenesis [BR:
pdn03009
]
HMPREF9137_0656
Enzymes [BR:
pdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HMPREF9137_0656
Messenger RNA biogenesis [BR:
pdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMPREF9137_0656
Ribosome biogenesis [BR:
pdn03009
]
Prokaryotic type
rRNA helicases
HMPREF9137_0656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
RecG_N
Motif
Other DBs
NCBI-ProteinID:
AEA22162
LinkDB
All DBs
Position
complement(772034..773920)
Genome browser
AA seq
628 aa
AA seq
DB search
MKTFEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLP
LLQRIDTGSKDTQAVVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIETQIHQLR
HGVQIIVATPGRLIDLMHRGKARLDKVSNVVLDEADEMLNMGFQESITEILTGVPEDRNT
LLFSATMSRDVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNARDKYLALKRLVDFY
PKIYAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLTQILVATD
VAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKHKVRNIERE
IGKEFVDGTLPAPEEICKKQLFKTMDDILKTDVDEEQIEPYMKDINRQFEYIDKEDIIKK
IVTATFGRFLDYYKNAPEIEKPSSRSSRETGRGGRGEGKSGRSRGPRKAESGYRRLFINL
GKTDGFYPGEVMQFINKNVHGHQEVGHIDLLSKQSYIEVPEQDAQKVMRALDGTTYKGRK
VRCNDADEGGHGRSGGGRGGYGSHGEGRKDSRERKGRGRRQQEEDFSFAQHKFKKDDWKE
LMKGAPAKLKGEEPDFSEEGWARRKPKK
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
ttgaagacatttgaagagttgggtgtgagcgaagagattcgccgcgccatcagtgagctt
ggatttgaacatccaatgcctgtacaggaagaagtaatcccctatttgctcggcaaccgg
aacgacgtcatcgcactggcacagaccggtacgggaaagacggcagcattcggcctgcca
ctgctgcaacggattgacaccggcagcaaggatactcaggcggtagtgctgagtccgaca
cgtgagctttgtctgcagattgcagacgacctgaaggatttcggcaagtatatcccccac
ctgcacatcgccgccgtctatggcggtgcctccatcgagacacagattcatcagctgcgc
catggcgtacagatcatcgtggctacgccgggacgtctgatcgacctcatgcaccgtggg
aaagcacgtctggacaaagtgtcgaacgttgtcctggacgaggctgacgaaatgctgaac
atgggattccaggagagtatcaccgagatactgaccggcgtgcccgaagaccgcaacacc
ctgctgttctcggctacgatgagccgcgacgtggaacgtgtggccaagggttacctgcac
gactacaaggaaatcgtcgtgggtagccgcaacgagggtgcggagaacgtcaaccacatt
tattatatggtgaatgcccgcgacaagtaccttgccctgaaacggctggtggacttctat
ccgaagatctatgccatcgtcttctgccggacaaaggtggagacacaggaaattgccgac
aagctgatcaaggacggctacaacgccgagtcgctgcacggcgacctctcgcagcaacag
cgcgacctcacgatgcagaagttccgttcgcatctcacacagattctcgtggctacggat
gtggctgcacgtggactggacgtgaacgacctgacgcacgtcatcaattacggcctgcct
gatgatattgaaaactatacccaccgttccggccgtacaggccgtgcgggcaagaagggt
acgtccatctcgatcatccactcccgtgagaagcataaggtacgcaatatcgagcgtgaa
atcggcaaggagttcgtggacggaacactgcctgcaccggaggaaatctgcaagaagcag
ctgttcaagacgatggatgacattctgaagaccgatgtcgatgaggaacagattgagcct
tacatgaaggacatcaaccgccagttcgaatatatcgacaaggaggatatcatcaagaag
attgtcacagccaccttcggacgcttcctggactactacaagaatgctcccgaaatagag
aaaccatcgtcccgcagctcgcgtgagacaggccgtggcggccgtggagaaggaaaatcc
ggacgcagcagaggaccccgcaaggctgaaagcggctacaggcggctgttcatcaacctc
ggcaagacggacggtttctacccgggcgaggtgatgcagttcatcaacaagaatgtacat
ggccatcaggaagtgggacatatcgaccttctgtcaaagcagagttacattgaagtcccg
gaacaggatgcgcagaaggtgatgcgcgcactggacggtacgacgtacaagggacgcaag
gtgcgttgcaatgacgctgatgaaggcggacatggacgttcgggcggcggccggggcggt
tacggaagccatggagaaggacggaaagacagccgtgaacgcaaggggcgcggccgccgg
caacaggaagaagacttttctttcgcacagcataagttcaagaaggatgactggaaagaa
cttatgaaaggtgcgccggccaagctgaaaggcgaagagcctgacttctcggaggaaggc
tgggcaagacgcaagccaaagaaatag
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