Prevotella denticola: HMPREF9137_0903
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Entry
HMPREF9137_0903 CDS
T01459
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pdn
Prevotella denticola
Pathway
pdn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pdn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF9137_0903 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdn03021
]
HMPREF9137_0903 (rpoC)
03400 DNA repair and recombination proteins [BR:
pdn03400
]
HMPREF9137_0903 (rpoC)
Enzymes [BR:
pdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF9137_0903 (rpoC)
Transcription machinery [BR:
pdn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF9137_0903 (rpoC)
DNA repair and recombination proteins [BR:
pdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF9137_0903 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEA21267
LinkDB
All DBs
Position
1074457..1078830
Genome browser
AA seq
1457 aa
AA seq
DB search
MAFKKDNKVKSNFSKITIGLASPEEILENSYGEVTKPETINYRTYKPERDGLFCERIFGP
TKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERAGHIELVVPVAHIWYFRSLPNKI
GYLLGMPTKKLDAVIYYEKYVVIQPGVVEGMKNADTEEDLNGSHKFDLLSEDEYLDIIDN
KLPEGNDRLDDSDPSKFIAKMGAEAVYDLLTGIDLDRLAGELRDRATTDSSQQRKTEALK
RLQVVEGFRQSVGVNRPEWMIMKIIPVTPPELRPLVPLDGGRFATSDLNDLYRRVIIRNN
RLKRLMEIKAPEVILRNEKRMLQEAVDSLFDNSRKSSAVKSESNRPLKSLSDSLKGKQGR
FRQNLLGKRVDYSARSVIVVGPELRMGECGLPKLMAAELYKPFIIRKLIERGIVKTVKSA
KKIVDRREPVIWDILENVMKGHPVMLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAF
NADFDGDQMAVHLPLSNEAVLETQILMLQSHNILNPANGAPITVPSQDMVLGLYYITKLR
PGAKGEGLSFYGSEEAIIAYNEKRCDLHAQVKVIVDDLVDGKIQKRMVETSVGRVIVNQI
IPTEIGFFNGIISKKSLRGLIADVIKAVGMARACEFLDGIKNLGYHMAYVAGLSFNLDDI
IVPDEKKDIVGKGQDEVDQVKANYEMGFITDKERYNQVIDAWTHVNNNLKASVMKHMTEA
DQGFNAVYMMLDSGARGSADQIAQLAGMRGLMAKPQKAGAEGAQIIENPIISNFKEGMSV
LEYFIASHGARKGLADTAMKTADAGYLTRRLVDVSHDVIITEEDCGSLRGLECRALKNGD
ETIATLYERILGRVSVHDVINPTTGDIIVAAGEEITEAKAQAIEESPIEMVEIRSVLTCE
SKKGVCKKCYGRNLATARMVQMGEAVGVIAAQAIGEPGTQLTLRTFHAGGVAGNAAANAT
ITAKNEAKIEFDELRTVPFVDDEDKECQMVVSRLAEIHFIDPNTGIVLLTDNVPYGSSLY
FKSGDTVKKGDLICKWDPFNAVIVSEYAGVLRLHDVEEGVTYKAETDDATGLTERIITDS
RDKTKVPTVDIVKVGAEKGDDGLYAPSDILGTYNLPVGGHLEQVLQDGAEVKTGMTLVKI
PRSVGGAGDITGGFPRVTELFEARNPSNPAVVSEIDGEITMGKVKRGNREIIVTSKTGEQ
RKYLVSLSKQILVQEHDAVRAGTPLSDGIITPADILSIMGPTAVQEYIVNEVQDVYRLQG
VKINDKHFEIIVRQMMRKVRIDDPGDTTFLEQELVDKLDFAEENDRIWGKKVVTDPGDSE
NCYKGQILSVRKLRDENSSLKRRDLKLVQVRDAVQATATQILQGITRAALGTKSFMSAAS
FQETTKVLNEAALRGKTDYLEGMKENVICGHLIPAGTGLRQWQKLIVGSQEEHERMEANK
KNVLDYANQEAAEVTKE
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaagaaagataataaagtaaagagtaatttcagcaagattactatcggactg
gcttcacctgaggaaatcctcgaaaactcctatggtgaggtgaccaagccagagaccatc
aactaccgtacctataaaccagagcgtgacggtctgttctgtgagcgtatcttcggtcct
acgaaagactatgaatgcgcctgcggtaaatacaagcgcatccgttacaaagggattgtc
tgcgaccgttgtggtgttgaggtgacggagaagaaggtgcgccgtgagcgtgccggacac
atcgaattggttgtcccggtggcccacatctggtatttccgtagtcttccaaacaaaatc
ggttaccttctgggtatgccaaccaagaagctcgatgctgttatttactacgagaaatat
gttgtcatccagccgggtgtcgtggaaggcatgaagaatgccgatacagaagaggacttg
aatggttctcacaagttcgaccttctttccgaagacgaataccttgacatcatcgacaac
aagctcccggaggggaacgaccgtctggatgattccgatcccagcaagttcatagccaag
atgggggcagaggcggtttatgacctccttacggggattgaccttgaccgtcttgccggc
gagctgcgtgaccgtgcgacaaccgactcgagccagcagcgcaagacagaggctctgaag
cgtctgcaggtggttgagggcttccgccagtcagtcggcgtgaacagaccggagtggatg
atcatgaagattattccggttacacccccggaactccgtccgctggttccattggatggc
ggccgtttcgcaacatccgacctcaacgacctctatcggcgtgtgatcatccgcaacaac
cgtctgaagcggctcatggagatcaaagccccggaggttatcctccgcaacgagaagcgt
atgcttcaggaagctgtcgattcactgttcgacaatagccgcaagtcgtcggcagtgaaa
agtgagagcaaccgtcctctgaagtctctctccgactcgctgaagggcaaacagggccgt
ttccgtcagaacctcctcggtaagcgtgttgactattctgcacgttcggtaatcgttgtt
ggtcctgagttgaggatgggcgaatgcggtctgccgaagctgatggcagctgagctttac
aagccgttcatcatccgcaagctcatcgagcgtggcatcgtgaaaaccgtcaagagtgcc
aagaagattgttgatcgtcgcgagccggttatctgggacatccttgaaaacgtcatgaaa
gggcatccggtcatgctgaaccgtgccccgacactgcaccgtctcggtatacaggctttc
cagccgaagctcatcgaaggtaaggctatccagctgcacccgctggcatgtacggcgttc
aacgccgacttcgacggtgaccagatggccgtccatctcccgttgagcaatgaggcagta
ttggaaacgcagattctgatgctccagagccacaatatcctcaatccggccaatggtgcg
ccgattaccgtcccttcacaggatatggtactcggtctctattatatcaccaagctccgt
ccgggtgccaagggtgagggactctctttctacggttcagaggaagccatcattgcttac
aacgagaagcgatgcgacctccatgcacaggtaaaggtcatcgttgacgaccttgtcgac
ggaaagatacagaagcgtatggtagagacttctgtcggtcgtgtcatcgtcaaccagatc
atcccgaccgagattggcttcttcaatggcattatttccaagaagtcgctccgcggtctc
attgccgatgtcatcaaggctgtcggcatggcacgtgcctgcgagttccttgacggtatc
aagaatctcggttaccatatggcctatgttgccggtctgtccttcaacctcgatgatatc
atcgtaccggatgagaagaaagacatcgtaggcaaggggcaggacgaggttgaccaggtg
aaggccaactatgaaatgggtttcattacggacaaggaacgttacaatcaggtcatcgat
gcctggacacacgtcaacaataacctcaaggcaagtgtgatgaagcacatgaccgaggct
gatcagggcttcaacgctgtttatatgatgctcgactccggtgcccgtggttctgctgat
cagattgcccagcttgccggtatgcgtggtttgatggcgaaacctcagaaagccggtgca
gaaggtgcccagatcattgagaacccgatcatctccaacttcaaggagggtatgtccgta
ctggagtacttcatcgcttctcatggtgcgcgcaagggtctggccgatacggctatgaag
acagccgatgccggatacctgacacgtcgtcttgtagacgtttcccacgatgtcatcatc
accgaggaggactgtggctctctccgtggactggagtgccgggcactgaagaatggcgat
gagaccatcgcaacgctttatgagcgcatcctgggccgcgtgtcggtacacgatgtcatc
aacccgacgacaggtgacatcatcgtcgctgccggcgaggaaatcaccgaagccaaagca
caggctatcgaggagtcgccgatcgagatggttgaaatccgttccgtacttacctgtgag
agcaagaagggtgtatgtaagaagtgttacggccgtaaccttgccactgcccgcatggtg
cagatgggtgaggcggtcggtgtcattgccgcacaggccatcggtgagccgggtacacag
cttaccctccgtacgttccacgccggtggtgtagctggtaatgctgctgccaatgcaacg
attactgcaaagaacgaggcgaagattgagttcgatgaacttcgtaccgtaccgtttgtc
gacgatgaggacaaggagtgtcagatggttgtcagccgtctggcggagatccacttcatc
gatcccaatacaggcattgttctccttacggacaacgtcccctacggtagttctctctac
ttcaagtccggtgacacggtcaagaaaggcgaccttatctgtaagtgggatccgttcaat
gccgttatcgtcagtgagtatgccggtgtcctccgtctgcacgatgtggaagagggtgta
acctataaggctgaaaccgatgatgcaacgggtcttaccgagcgtatcatcacggattca
cgtgacaagacgaaagtcccgacggttgatatcgtcaaggtcggtgccgagaagggcgat
gacggcctttatgcgccatctgacatcctcggtacttacaacctcccggtaggcggccac
ttggagcaggttctccaggacggtgcagaggtcaagacaggtatgacgcttgtcaagatt
ccgcgttccgttggcggtgctggtgatattacaggtggttttccacgtgtcaccgagctt
ttcgaggcccgtaacccgtctaatccggctgtcgtatcagaaatcgacggtgagattacc
atgggcaaggtaaagcgtggtaaccgtgaaatcatcgtgacttccaagaccggtgagcag
cgcaagtatcttgtaagtctgtccaagcagattctggtgcaggagcatgatgctgtccgt
gccggcactccactgtctgatggtatcattacaccggccgacatcctgtctatcatggga
ccgacggctgttcaggagtatatcgtcaatgaggtgcaggatgtgtatcgactccagggt
gtgaagatcaacgacaagcacttcgagattatcgttcgccagatgatgcgcaaagtgcgt
atcgacgacccgggtgatacgactttccttgagcaggaactggttgacaagctcgacttc
gccgaggagaatgaccgcatctggggcaagaaagtagtcactgatccgggcgattcggag
aattgctataagggtcagattctctctgtccgcaagctgcgtgatgagaattcaagcctc
aagcgtcgtgacctcaagctcgtccaggtgcgtgatgccgttcaggcaacggccactcag
attcttcagggtatcacacgggctgccctcggtacgaagagcttcatgagtgctgcctcc
ttccaggagacaaccaaggtgctcaacgaggctgctctccgtggcaagacagactacctt
gagggtatgaaagagaacgttatctgtggtcaccttatccctgccggtacgggactccgc
cagtggcagaagctcattgtcggatcacaggaagagcacgagcgcatggaggccaacaaa
aagaacgttcttgattatgccaaccaggaggcagcagaggttacaaaggagtaa
DBGET
integrated database retrieval system
