Prevotella denticola: HMPREF9137_1437
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Entry
HMPREF9137_1437 CDS
T01459
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pdn
Prevotella denticola
Pathway
pdn03410
Base excision repair
pdn03430
Mismatch repair
pdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HMPREF9137_1437 (recJ)
03430 Mismatch repair
HMPREF9137_1437 (recJ)
03440 Homologous recombination
HMPREF9137_1437 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdn03400
]
HMPREF9137_1437 (recJ)
DNA repair and recombination proteins [BR:
pdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HMPREF9137_1437 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HMPREF9137_1437 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF9137_1437 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AEA20967
LinkDB
All DBs
Position
complement(1675644..1677368)
Genome browser
AA seq
574 aa
AA seq
DB search
MHFKWNHTPPTAEQESAAGELGEKLGISPILAALLIRRGITTESAAKRFFRPQLADLINP
FLMKDMDAAVDRLNDAMGHKERVLVYGDYDVDGCTAVALVYKFLRQFYSNIDYYIPDRYD
EGYGVSRKGIDFAKETGVRLIIILDCGIKAVKEIAYAKEQGIDFIICDHHVPDETMPPAV
AILNPKRPDDAYPFKDLCGCGVGFKFMQAFAKNNNIPFSRLIPLLDFCAVSIAADLVPVV
DENRILAFHGLKQLNQNPSLGLKAIIDICGLNGRELSMSDIIFKIGPRINASGRMENGKK
SVDLLVEREYGMAFRQAKHIDEYNEQRKDVDRQMTEEANQIVARLESQKHQSSIVLYDEH
WKKGVIGIVASRLTEIYFRPTVVLTRDENLATGSARSVAGFDVYAAVKSCRDLLLNFGGH
TYAAGMTMKWTDVKEFCRRFQTYVEEHIEPEQREAILDIDAVIDFKDITKKLHNDLKRFA
PFGPGNPKPLFCTLDVYDFGTSKVVGREQEHIKLELVDSKSNNVMNGIAFGQSASARYIK
SKRSFDIAYTIEDNVFKRGAVQLQIEDIRPTDES
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgcacttcaaatggaaccacacaccgcccacagctgaacaggagagtgctgccggagag
ctgggggaaaagctgggaatcagccccattctcgccgccttgctgatacgccgaggcata
acgacggagagtgctgccaaacggttcttccgtccacagcttgccgacctcatcaaccct
tttctgatgaaggatatggatgcggctgtcgaccggctcaatgatgcaatgggacacaag
gaacgcgtgctcgtctatggcgactacgatgtagacggctgtacggctgtggcattggta
tataaattcttgcgacagttctattccaacatcgattactatattcccgaccgctatgat
gaaggctatggcgtgagcagaaagggaattgattttgccaaagaaacaggagtcagactc
atcatcattctcgactgcggaatcaaggcagtaaaagaaatcgcctatgccaaggaacag
gggattgacttcatcatctgcgaccatcatgttcccgacgagacgatgccgccggctgtg
gccatccttaacccgaaacggcctgacgatgcctatccgttcaaggatctctgcggctgc
ggcgtaggtttcaagttcatgcaggcattcgccaagaacaacaacattccgttttcacgg
ctcatccccctactcgacttctgtgccgtgagcattgccgccgacctggtacctgtcgtc
gacgaaaaccgtattcttgctttccacggactgaagcagctgaatcagaacccgagtctc
gggctgaaagccatcattgacatctgcgggctgaacggacgcgaactgtccatgagcgac
atcatctttaagataggaccgcgtatcaatgccagcggacgtatggaaaacggcaagaag
agtgtcgacctgcttgtcgagcgagaatacggaatggctttccggcaggcaaaacacatc
gacgaatacaatgaacagcggaaggatgtagaccgccagatgaccgaggaggccaatcag
attgtggcacgcctggaaagccagaagcatcagtcgagcatcgtgctctatgacgagcac
tggaagaaaggtgtcattggaatcgtggcttcccggctgactgaaatctatttccggccg
acggtagtgctgacgcgcgacgagaaccttgcaacgggttcggcccgcagcgtggccgga
ttcgatgtatatgcagccgtcaagagctgccgtgacctgttgctgaacttcggcggacat
acctatgccgccggaatgacaatgaaatggactgatgtaaaggagttctgcagacgtttc
cagacctatgtcgaggaacacatcgagcctgaacagcgtgaagccatactggatattgat
gcggttatcgacttcaaggatattaccaagaaactgcacaacgacctgaaacgctttgcc
ccgttcggacctggcaacccaaagccgctcttctgcacgctggatgtatatgactttgga
acgagcaaggtcgtagggcgtgaacaggaacatatcaaactggaactggtcgattccaaa
tcgaacaatgtcatgaacggcattgctttcgggcagagtgcgtcagcacgatacatcaag
tccaaacgttcgttcgatatagcctacaccatcgaggataatgttttcaaacggggagct
gtccagctgcagattgaggacatcaggcctacggacgaaagttga
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