Prevotella denticola: HMPREF9137_2125
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Entry
HMPREF9137_2125 CDS
T01459
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pdn
Prevotella denticola
Pathway
pdn03030
DNA replication
pdn03430
Mismatch repair
pdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF9137_2125
03430 Mismatch repair
HMPREF9137_2125
03440 Homologous recombination
HMPREF9137_2125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdn03032
]
HMPREF9137_2125
03400 DNA repair and recombination proteins [BR:
pdn03400
]
HMPREF9137_2125
Enzymes [BR:
pdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMPREF9137_2125
DNA replication proteins [BR:
pdn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMPREF9137_2125
DNA repair and recombination proteins [BR:
pdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMPREF9137_2125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
T2SSK
Motif
Other DBs
NCBI-ProteinID:
AEA20603
LinkDB
All DBs
Position
2489176..2492895
Genome browser
AA seq
1239 aa
AA seq
DB search
MEDYVHLHVHTDYSVLDGQSKVTRLVDKAVADGMKGMAVTDHGVMFGIKEFSDYCAKVNK
GRKEKGEAPFKPVFGCEMYVARRTMHDKDKSMHDNSGYHLIVLAKNYHGYKNLIKLVSKA
WVDGYYYKPRTDREQLEKYHEDLIVCSACIAGEIPSKIIHDDIEGAREACEWYHRVFGDD
FYLELQRHEVKDPTLVANREAYPLQQKANKVLLRFAEEYGIKVICTNDCHFEDKETAEAH
DHLLCLSTNEDLDDPKRMRYSKQEWFKTRQEMNEVFSDIPEALTNTLEILDKVEIYSIDH
GPIMPFFPIPEDFGTEEEWRKKFSEDDLYREFTTDENGEHPLPAEEGQKVIRRLGGYEKI
YRIKFEADYLAKLAYDGAGKLYGDPLSDEVKSHIRFELHVMKTMGFPGYFLIVQDFINAA
REKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDFDDDG
RGKVLQWVMDKYGHENCAHIITYSTMATKNSIRDVARVEKLSLDVSNGLCKAIPDRLPDG
MKMNLTNAIKCTPRLQEAEVSEDARERNTIKYAKMLEGTVRGTGIHACGFIICRNPIDDW
VPVSTASDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVIRQTTGDVV
DLDNIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRPGPMD
YIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDALRKA
MGKKKKAIVDQMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATCYSWVAYQT
AYLKAHYPAEYMAALMTRRFSQITEITKLMEECKAMKITTLGPDINESQIGFGVNSRGEI
RFGLAAIKGMGASAAESIVREREKNGLYKDIYDFAERVDISNVNRKAFESLAYSGGFDSF
GLQREQYFAETGKGSLFLDTIVRYGQLYQAEKAQQQNSLFGGMDAVEVMHPVAPKTEKWP
AIEKLNKERELVGIYLSAHPLDEYSVVLDNMCNTHCSQIGRNADMEVLSKVDEVTFGGIV
TAVSERFSQKTGKPFGFVTIEDFKGAGELALFGDDWARWNNLLKVNYTIYITARCQPRYR
NNPSILELKVQRVEQLYDVKAHRLERLTIAMDASAMDEALVSELATVVEQHEGSTQLFIQ
LRTPDNTTVVLKSRDRGVNVDRRLIDFITANEKMEFHIN
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggaagattacgtacatttgcacgtccatacggattactctgtcctggacggacagtcg
aaggtgacacgtcttgtcgacaaggccgtcgccgacgggatgaaaggcatggccgtcaca
gaccacggtgtgatgttcggcatcaaggagttctcggactattgtgccaaggtcaacaag
ggcaggaaggagaagggcgaggcaccgttcaaaccggtcttcggctgcgagatgtatgta
gcccgtcgcacgatgcacgataaggacaagagcatgcacgacaactcaggctatcacctc
atcgtgctggcgaagaactaccatggttacaagaacctcatcaagctcgtgtcgaaggca
tgggtggacggatattattataaaccccgtacagaccgggaacagctcgagaagtaccac
gaggacctgatagtgtgctcggcctgcatcgccggcgagatacccagcaagatcatccat
gacgacattgaaggggcgagggaggcctgcgagtggtatcatcgggtgttcggcgatgat
ttctacctggagctgcagcggcacgaggtgaaggatccgacgctggtggccaaccgcgag
gcctatcccctgcagcagaaggccaacaaggtgctgctgcgtttcgccgaggaatacggc
atcaaggtcatctgtaccaacgactgccacttcgaagacaaggaaacggccgaggcccac
gaccatctcctgtgcctctcgacgaatgaagacctggacgatccgaagcgtatgcgctac
tccaagcaggagtggttcaagacacggcaggagatgaacgaagtcttctccgacattccc
gaggcgctgacgaacacgctggagatactcgacaaggtggagatctacagcatcgaccat
ggccccatcatgcctttcttccctatccccgaggatttcggaacggaggaggaatggcgg
aagaagttttccgaggacgacctgtaccgggagttcacgaccgacgagaacggagagcat
ccgcttccggctgaggaggggcagaaggtcatccggcgtctgggaggctacgagaaaatc
taccgcatcaagttcgaggcagactatctggcaaagctggcttatgacggagccgggaaa
ctgtatggcgacccgctgtccgacgaggtgaagagccacatccgattcgagctgcacgtg
atgaagacgatgggtttccccggctacttcctcattgtgcaggacttcatcaatgccgcc
cgcgagaagctgggtgtcatggtgggaccggggcgtggctctgccgccggatcggtagtg
gcctattgtctgggaattacgaagattgacccgctgaaatacgacctgctgttcgaacgt
ttcctcaatcccgaccgtgtcaacctccctgatatcgacaccgacttcgatgacgacgga
cgcggtaaggtgctgcagtgggtcatggacaagtacggccacgagaactgcgcacacatc
atcacttattccactatggcgacgaagaactccatcagggacgttgcccgtgtggaaaaa
ctgtcgctggacgtgtcgaacggtctctgcaaggcgattcctgaccgtctgcccgacggc
atgaagatgaacctgacgaatgccatcaagtgtacccccagactgcaggaggcggaggtc
agcgaagacgcgagggagcggaataccatcaagtatgccaagatgctggaaggaacggtg
cgcgggacgggcatccatgcctgcggctttatcatctgccgcaaccccatcgacgactgg
gtgccggtgtcgacggcttccgaccccgacttcccggaaaagaaagtacctgtgacacag
tacgacggccatgtgattgaatcgaccggtctcatcaaaatggacttcctcggactgaag
actctctccgagctgaaagaggcctgcaaggtcatcaggcagacgacgggcgacgtggtc
gacctcgacaatatcccgatcgacgatgaactgacctaccagctctaccagcgcggacag
accgtcggcaccttccagttcgagtcggccggtatgcagaagtacctccgggaactgcat
ccgactgtgttcgaggaccttatcgccatgaacgctctctaccggccgggaccgatggac
tatatccccgacttcatcaagcgcaagaacgacccctctctggtcaagtacgacatcccc
tgcatggagaagtacctcaaggacacctatggaatcaccgtctaccaggagcaggtgatg
ctcctcagccgccagctggccaacttcacgcgcggtgagagcgacgcactccgcaaggcg
atgggaaagaagaagaaggccatcgtcgatcagatgaagccgaagttcatcaagcaggga
caggagaacggacacgatccgcaggttcttgagaaaatatggagtgactgggagaaattc
gccagctacgccttcaacaagtcacacgccacctgctactcatgggtagcctaccagacc
gcctacctgaaggcgcattatccggctgaatacatggctgcgctgatgacacgccgtttc
agtcagatcactgaaatcacgaaactgatggaggagtgcaaggcgatgaagatcaccacg
ctcggcccggacatcaacgagagccagatcggcttcggcgtgaacagccgcggcgagata
cgcttcggactcgccgccatcaaggggatgggtgccagtgccgccgagagcattgtgcgt
gaacgggagaagaacggcctttacaaggacatctacgactttgccgagcgtgtcgatatc
agcaatgtgaaccggaaggcttttgaaagccttgcctacagcggcggcttcgacagcttc
ggcctgcagcgtgagcagtactttgccgagacggggaaaggcagcctgttccttgacacc
atcgtccgttacgggcagctctaccaggcggagaaggcacagcagcagaactctctcttc
ggcggcatggatgctgtagaggtaatgcaccctgtcgcaccgaagaccgaaaaatggccg
gccatcgagaaactgaacaaggaacgtgaactggtgggtatctacctgtcagcccatccg
ctcgacgagtacagtgtcgtgctggacaatatgtgcaacacccactgttcacagatagga
cgcaatgccgatatggaagtgctgtcgaaggtggatgaggtgacgttcggcggcatcgtg
accgctgtcagcgaacgcttctcacagaagaccggaaagccgttcggctttgtgactatc
gaagactttaaaggggcgggcgaactggcactcttcggcgacgattgggcacggtggaac
aatctcctgaaggtgaactacaccatttatataacagccagatgccagccccgctatcgg
aacaatccctcgatactggaactgaaggtgcagcgtgtcgagcagctttacgatgtcaag
gcacatcggctggagcggctcaccattgcgatggacgcatcagccatggacgaagccctt
gtctcggaactggcaacggtcgtggagcagcatgagggcagcacacagctcttcatccag
ctgcgaacacctgacaatacgacggtcgtactgaagagccgtgacagaggggtgaatgta
gaccgcaggctgatcgacttcataacggccaatgagaagatggagttccatatcaactga
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