Parascardovia denticolens: PSDT_0287
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Entry
PSDT_0287 CDS
T03978
Name
(GenBank) ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pdo
Parascardovia denticolens
Pathway
pdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSDT_0287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdo03019
]
PSDT_0287
03009 Ribosome biogenesis [BR:
pdo03009
]
PSDT_0287
Enzymes [BR:
pdo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSDT_0287
Messenger RNA biogenesis [BR:
pdo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSDT_0287
Ribosome biogenesis [BR:
pdo03009
]
Prokaryotic type
rRNA processing factors
PSDT_0287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
BAR04806
UniProt:
E6K2Z8
LinkDB
All DBs
Position
337777..340884
Genome browser
AA seq
1035 aa
AA seq
DB search
MTDASEQVNADQSSQASQPSQTQTSSSSSSPAAGSASGSSRSGAARSGASAGMPKRSTKS
RGRVTRGAGAAGADVPVVFSASPTKPALEAAPAQESAVASAAPSASGSGQGGASSQQKSP
QDSPDRGERQSRLDRLASELFVDKGVTSPAAKPQSPAKVAPSIRASSSSRASSAKSAPSS
FLFSAPSVEERAANIVLPPAKPMTSLLFQEPVLPAAPRRSAEESLDELDQALDQSTGRRR
KRRPAESDHDRRQDHNHDRDHGRDHDSEREPALPSSRRWFKANVEDLDSVFENAFDEVEE
RRSNRRLNAQERRAAAEVELIEEDLEDDDIEYRPIVDEGDYEDGESREDEDQTQEEEDDS
RVRRRRHGRNSPRDARDSRGSGRSGSGDEESRDEEDEEESGTRTRRRRRNRSGSSSGPGS
SASSASSSSSNHEDEDEEPTTTRRRRRRRGHGATDEEEEIPRSRKQQYIDKITGIEGSTR
LEAKRQRRRDNRRERNHHGLITEQDFLARREKVDRLMVVREHGHHSQVSVLEDNVLVEHY
ISDIDEVASVGNIYQGRVQNVLPSMEAAFVDIGQHRNGVLYAGEVNWDATRLEGQPRLVE
HAFRPGDDVLVQVTKDPIGHKGARLTSQITVAGRYLVLVPSGGITGVSRKLPDRERTRLK
SIVSTISPDNMGVIIRTAAEGVSEDALKRDMGHLVRQWQSVQDNLKKYESSKRPHLLLGE
PDVVIRVIRDIFNDDFNKLIVEGDGVYERIARYLEVAAPDLKDRLEKWDPEEHEGKDVFD
RWSIDSQLRKGMERKVYLPSGGSLVIDRTEAMTTIDVNTGRFIGKGQSLEETVTKCNLEA
AEEIVRQLRLRDIGGMIMIDFVDMVMPQNRDLVLRRLVECLSRDRTKHQVAEVTSLGLVQ
MTRKRVGQGLVEAFSEECPTCGGRGFILHDEPTVSSKFDDPYALKGGDPFIHTNKHGMGH
AGAGEEIEGNAPQGSTPQVKATLARIAAAAEAAEADKTEEDSDGTVEDSSSGKAGKPGTG
TREPSTQEADTQEED
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatgcaagcgaacaagtgaacgcggatcaatcttcccaggcttctcagccttcc
cagacccagacttcctcctcctcttcttcccctgccgcaggttcggcttccggctccagc
cggagtggggcggcgcggagtggggcttcggccgggatgcctaagaggagcaccaaaagc
cgcggtcgggtgaccaggggggccggcgccgccggtgcggacgttcccgtcgttttctcc
gcctctccaaccaagccggcgcttgaggcggccccggcacaggagagcgccgtagcctct
gccgccccttcggcttccggttccggtcaaggcggggcctcgtcgcagcagaagagccct
caagactcccctgaccgcggcgaacgtcaatcccgcttggaccgtctggcctccgaactg
ttcgtcgacaaaggggtgacctctccggccgcaaagccgcagtctcccgccaaggtggcc
ccctcaatccgggcctcttcgtccagtcgtgcctcgtccgccaaatccgccccctcctcc
ttcctcttctcggcccccagcgtcgaagaaagggcggccaacatcgtcctgcccccggct
aagccgatgacttcccttcttttccaggagccggtcctgccggccgccccccggcgttcg
gccgaagaaagcctggacgagctggatcaggctttggaccaatccacgggccgccgtcgc
aagcgtcgcccggcggagtcggatcacgaccgtcgtcaggaccacaatcatgaccgtgac
catggccgggaccacgattcggaacgcgagcctgcgctgccctcgtcccgccgttggttc
aaggccaacgtggaagacctggattcggtcttcgagaacgccttcgacgaagtggaagag
cgccggtccaaccgccgtctcaacgcccaggaacgccgcgcggccgctgaagtcgagctg
attgaggaagacctggaagacgacgacatcgagtaccgccccatcgtcgatgaaggcgat
tacgaggacggggaatcccgggaagatgaggaccagacacaggaagaggaggacgattcc
cgggtccgcagacgtcggcatgggcggaactccccccgggacgcccgtgattcccgcggc
tccggcaggtccggttccggggatgaggaatcccgggacgaagaggacgaggaggaatcc
ggcacccggaccaggcgccgccgtcgcaatcggtctggatcctcttcgggccccggctct
tccgcttcttccgcttcttcctcttcttccaatcatgaggatgaggacgaggaaccgacg
accacccgtcgtcgtcgccgccgccgtggtcatggggccacggatgaggaagaggagatt
cctcgttcccgcaaacagcagtacattgacaagatcaccggcatcgaaggctccacccgt
ctggaagccaagcgccagcgccgccgcgataatcggcgtgaacgcaaccaccatggtctc
atcaccgagcaggactttctggcccgccgcgagaaggtggaccggctcatggtggtgcgt
gagcacgggcatcattcccaagtgtccgtgctcgaagacaacgtcctggtggagcattac
atttccgatatcgacgaggtcgcctcggtcggcaacatctatcaaggccgcgtgcagaac
gtcctgcccagcatggaggccgccttcgtggacataggccagcaccgcaacggcgtcctt
tacgccggcgaggtcaactgggacgccactcgcctggaaggccagccccgcctggtggag
cacgccttccgcccgggggacgatgttctggtccaggtgaccaaagaccccatcggccat
aaaggtgcccgcctgacctctcagatcaccgtggccggccgctacctggtcctggtcccc
tccggcggaatcaccggcgtctcccggaaactgcccgaccgcgaacggacccggctgaag
agcatcgtctccaccatctccccggacaatatgggggtcatcatccgcaccgccgcggaa
ggcgtgagcgaagacgccctgaagagggacatggggcacctggtcaggcagtggcaaagc
gtccaggacaatctcaagaaatacgagagctccaagcgtccccatctcttgctgggcgag
ccggacgtggtcatccgcgtcatccgtgacatcttcaatgacgacttcaacaaactcatc
gtggaaggcgacggggtctacgaacgcatcgcccgctatctggaagtcgccgcccccgac
ctcaaggatcggctggagaagtgggatcccgaggagcacgaaggcaaggacgtcttcgac
cgctggtccatcgactcccagctgcgcaaaggcatggaacgcaaggtctacctgccttcc
ggcggatccctggtcatcgaccggaccgaagccatgaccaccatcgacgtgaacaccggc
cgtttcatcggcaaaggccaatctttggaagagacggtgaccaagtgcaacttggaggcg
gccgaggagatcgttcgccagctgcgcctgcgcgatatcggcggcatgatcatgattgat
ttcgtcgatatggtcatgcctcagaacagggacctggtcctgcgccgtctggtcgaatgc
ctgtccagggacaggaccaagcatcaggtggccgaggtcacttcgctaggcttggtgcag
atgacccgcaagagggtcggccagggcctggtggaagccttctccgaggagtgcccgacc
tgcggcggtcgcggcttcatcctgcatgacgagcccacggtctcttccaaattcgacgac
ccttacgccctcaaaggcggcgaccccttcatccataccaataagcatgggatgggccac
gccggcgccggcgaagaaatcgaaggcaacgctccccagggatccaccccgcaggtcaag
gccactttggcccggatcgcagccgccgccgaggccgcggaagccgataagaccgaggag
gactccgacgggaccgtcgaagacagctccagcggaaaagccggcaagccggggactggt
acccgggagcctagcacacaggaagctgacacccaggaggaggattag
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