Parascardovia denticolens: PSDT_0433
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Entry
PSDT_0433 CDS
T03978
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pdo
Parascardovia denticolens
Pathway
pdo03030
DNA replication
pdo03430
Mismatch repair
pdo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSDT_0433
03430 Mismatch repair
PSDT_0433
03440 Homologous recombination
PSDT_0433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdo03032
]
PSDT_0433
03400 DNA repair and recombination proteins [BR:
pdo03400
]
PSDT_0433
Enzymes [BR:
pdo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSDT_0433
DNA replication proteins [BR:
pdo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSDT_0433
DNA repair and recombination proteins [BR:
pdo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSDT_0433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
DUF5487
Motif
Other DBs
NCBI-ProteinID:
BAR04952
UniProt:
E6K0F8
LinkDB
All DBs
Position
514605..518174
Genome browser
AA seq
1189 aa
AA seq
DB search
MTRVADSSFVHLHNHTDYSTLDGAVPVKKMVAVAKDLGQKAVGITDHGNMHGAYEMWRTA
VDAGIKPIIGIEAYITPGTARGDKTRVHWGTKEQHSDDVSANGSYTHMTMWAQDDTGLVN
LLKASSVANLEGLMGKNPRMDRDILQTYHQGIIATTGCPSGAVQTRLRLGQYKEALREAG
ELQDIFGKENFYVEIMDHGLEIETRVTQDLLRIAKEIGAPLVATNDCHYGLESDAAAQDA
LLCINSGSRLTDSDRFRFNGSGYFLKSAQQMRDLFKEFPQACDNTLEIAERCNVMFDDYE
DGAFMPEFDCPEGWDATSLFLHDVEQGLEKRYPAGVPEDVAKQADYECGVICQMQFCGYF
LVVADYINWAKTHGVMVGPGRGSAAGSMVAYAMGITELDPIKHGLIFERFLNPERVSLPD
IDVDFDPAGREKVLRYVTEKYGSDKVAQCVTYGTIKTKQALKDSARIMDYDFQMGETMTK
ALPGAVGGKDISLHDIFDLTAKRYPEAQEFRDLYNENPDVQKITEEAKGIEGLIRQTGVH
ACATIMASQPITNTSPLMKRTDGTVTTTFEYHTCETLGLVKMDFLGLANLTVIKEAIKNI
HDNGKGDIDLEKIPIDDKATYDLLSSGHTLGVFQLDSDGMQSLLKQLKPDNFNDISALIA
LYRPGPMDVDSHNNYAKRKNGLQEITPIHPELEKPLAQVLDETYGLIVYQEQVQSAARIL
AGYSLGRADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSEEAAQAVWDVLVPFAGYAFN
KAHSAAYGLVSYWTAYLKTHYPVEFMAALLQGERSNKDKTALYLGECRRMNIKVLPPDVN
ESVGHYSAVGKDIRFGLGAVRNVGDKVVDAIVAERDKAGGKGKFVNFLDWINRMPVEVLN
KRTVESLIKGGAFDSIDPNRRALFTIHQTAIDQVIPLKRKEAEGQFDLFADSEEDDSASA
AALGDANISVPPIDEWDKKTKLNFEREMLGLYVSDHPLSGLASVLASLSDMSIAQLLNRA
ATMPEKAQITIAGLVTGVDRRVSKAGKPWAIVTLEDLEGSIQALFFGKSYTENQDKLLVD
QVIQVKGSVSVRDDGISIYGREVDVPNVESADVQPVLISLPEQALEMPRMRRLSAVLANH
PGFCEVRLLVQHPDKKISTIYLGDGFRVARDTSLFGEIKTIFGPRCIES
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgacccgagtagctgattcctccttcgttcacctgcacaatcacactgattactccact
ctggatggggccgtgcctgtgaagaagatggtcgcggtggccaaagacctggggcagaaa
gctgtgggcattaccgaccacgggaatatgcacggggcttacgagatgtggcggacggcc
gtggacgccggaatcaagcccatcatcggaatcgaagcctacatcaccccgggaacggcc
cgaggggacaagacccgcgtccattggggaaccaaagagcaacattcggacgacgtgtcc
gccaacggttcctatacccatatgaccatgtgggcccaggacgacacaggcctggtcaac
ctgctcaaggcttcgtccgtggccaatctggaaggtctcatgggcaagaacccgcgcatg
gaccgggacatcctgcagacctatcatcaagggatcatcgccaccaccggctgcccttcg
ggggccgtgcagacccgcctgcgcctgggtcaatacaaggaggccctgcgcgaggccggc
gagcttcaggacatcttcggcaaagagaacttctacgtggagatcatggaccacggtctg
gaaatcgagaccagggtgactcaagaccttctgcggatcgccaaggaaatcggggctccc
ctggtggccaccaacgattgccactatggtctggagtccgacgcggccgcccaggacgcc
ctgctttgcatcaattctggctcccgcttgacggattctgaccgtttccgtttcaacggt
tccggttacttcctcaagtccgcccaacagatgagggacctcttcaaggaattcccgcag
gcctgcgacaacaccctggagatcgccgaacgctgcaacgtcatgttcgacgattacgaa
gacggcgccttcatgccggaattcgactgccccgaagggtgggacgccacctccctcttc
ctgcacgacgtggagcagggtctggagaagcgttacccggccggggtccccgaggacgtg
gccaaacaggccgattacgaatgcggggtcatctgccagatgcagttctgcggctacttc
ctggtggtggccgattacatcaactgggccaagacgcacggggtgatggtcggccccggc
cgtgggtcggccgcaggaagcatggtggcctacgccatggggatcaccgaactggaccct
atcaaacacggtctgatcttcgaacgcttcctcaacccggagcgcgtctccctgcccgat
atcgacgtggacttcgacccggccggccgtgaaaaggtcctgcggtacgtgaccgaaaaa
tacggatccgacaaggtggcccaatgcgtcacctacgggaccatcaagaccaagcaggct
ctgaaggattcggcccgcatcatggactacgatttccagatgggggagaccatgaccaag
gccttgcctggggccgtgggaggcaaggacatcagcctccatgacatcttcgaccttacg
gccaaacgctatccggaggcccaggaattccgcgacctttacaacgagaatcctgacgtg
cagaagatcactgaagaggccaagggcatcgaaggcctgatccgtcagaccggcgtgcac
gcctgcgccaccatcatggcctcccagcccatcaccaacacctcccctttgatgaaacgc
accgatgggaccgtcaccaccaccttcgaataccatacctgcgaaaccctgggcctggtg
aagatggacttcctggggctggccaacctgacggtcatcaaggaggccatcaagaacatc
catgacaacggcaaaggggacatcgacctggagaagatccccatcgatgacaaggccacc
tatgacctgctctcctccggccacaccctgggcgtttttcagcttgattccgacggcatg
cagagcctgctgaaacagctcaagccggataacttcaacgatatctccgctttgatcgcc
ctttaccgacccggccctatggatgtggactcccacaacaactacgccaaacgcaagaac
ggtttgcaggagatcacccccatccaccccgagctggagaagcccctggctcaggttttg
gatgagacttacggcctgatcgtctatcaggagcaggtgcagtccgccgcccgcatcctg
gccggttattccctgggccgggccgatgtgctccgccgggccatgggcaagaagaagccc
gaggtcctggccaaggagaagatccccttcttcgcggggatgaaggagcacggctactcg
gaagaggccgcccaggccgtgtgggacgtgctggtgcctttcgccggctacgctttcaac
aaggcccattcggccgcatacggactggtctcctattggaccgcctacctgaagacccat
tatccggtggaattcatggccgccctgcttcaaggagaacgcagcaacaaggacaagacc
gccctctacctgggcgaatgccgacggatgaacatcaaggtcctgccgccggatgtgaac
gaatccgtcggacattattccgctgtgggcaaggacatccgtttcggcctgggggccgtg
cgcaacgtgggcgataaggtggtggacgccatcgtggccgaacgcgacaaggccggcggc
aaaggcaagttcgtcaacttcctggattggatcaaccggatgccggtggaagtgctcaac
aagcgcacggtcgagtccctgatcaaaggcggggccttcgactcgatcgatcccaaccgg
cgagcccttttcaccatccatcagacggccatcgaccaggtgatccccctcaaacgcaag
gaggcggaaggccagttcgaccttttcgccgattcggaggaggatgattcggcctcagcg
gccgccttgggcgacgccaacatctccgtgcctcccatcgatgagtgggacaagaaaacc
aagctcaatttcgagcgggagatgctgggcctttacgtgtccgatcatcctttgagcggt
ctggcctcggtcctggcctccctgagcgatatgtccatcgcccagctgctgaaccgggcg
gcgaccatgccggagaaggcacagatcaccatcgccggcctggtcaccggcgtggacaga
cgcgtctctaaggccggaaagccttgggccatcgtcaccctggaagatctggaaggcagc
atccaggccctcttcttcgggaagtcctacacggagaatcaggacaagctcctggtcgat
caggtcattcaggtcaaaggaagcgtctcagttcgcgacgatggaatcagcatctacggc
cgcgaggtggatgtgcccaatgtggagtcggccgatgtgcagccggtcctcatctccctg
cccgagcaggccttggagatgccgcggatgcggaggctgtcggccgtcctggccaatcac
ccgggcttctgcgaagtccgtctgctggtgcagcatccggataagaagatttccacgatt
tatttgggagatggtttccgggtggcccgggacacctcgcttttcggggagatcaagacg
attttcgggcctcgctgcatcgagtcctga
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