Parascardovia denticolens: PSDT_0735
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Entry
PSDT_0735 CDS
T03978
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pdo
Parascardovia denticolens
Brite
KEGG Orthology (KO) [BR:
pdo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PSDT_0735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdo03021
]
PSDT_0735
Transcription machinery [BR:
pdo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PSDT_0735
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
FimL_2nd
DUF1661
HTH_20
Motif
Other DBs
NCBI-ProteinID:
BAR05254
LinkDB
All DBs
Position
887220..889259
Genome browser
AA seq
679 aa
AA seq
DB search
MATKKTVTTDANPTVTVSEIDASVKGSEVKISRTKTKKATGTKKATASKKTTVKKPSSKA
ASAKATSAKAKSDKTESGKVEPVAEKDVASTQKPAKAKKSVASDKAEKSAESNKGKSAKT
VKSDKTEKAEDSAKTVKSTKTSATKAPKTKAASRSSSTSKAKKASSTEAKEAQSKAAEPT
AAKTGKSRKTDETEKEEGKASAKKTTSKKASAKKVAAKTSEKTGKKSSAKSAEKTEDEDL
PAEEASAEEGKVEEDKVDESTSASDEDDQSLNDDDDMDGDLGPGSHAVNALDHIDDSVEL
DENGDPIQEDDENIVTDSEEKDLEDEGDEEEEAPVEKKPLEEGAFVVSEKDDDDEEESVT
PAGNPKRRILTTGATSDPVKDYLKQIGRVNLLNAQQEVDLSERIEAGLYAQHLLDTTPAD
QMTFQRKRELKWAANDGRKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA
VEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLG
REPTPDELARELDMPVEKVQEVQKYGREPISLHTPLGEDGDSEFGDLIEDTDAIAPSEAV
AFSLLQEQFKQVLETLSPREAGVIKMRYGLEDGQPKTLDDIGHVYGVTRERIRQIESKTM
SKLRHPSRSQTLQDFLDQE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
gtggccaccaagaaaaccgtcacgaccgatgcgaatcctactgtcactgtatcggaaatc
gatgcgtctgtaaagggttccgaggtgaaaatttccaggaccaagacgaaaaaggccacg
gggacgaagaaagcgaccgccagcaagaaaaccacggtgaaaaagccgagttccaaagcc
gcctcggccaaagccacatcagcgaaggccaagtcagacaagaccgaatcggggaaggtc
gaacctgtagccgaaaaagacgttgcttccactcagaagccagcgaaggccaagaagtca
gttgcgtccgacaaggctgagaaatcagctgaatccaacaagggcaaatctgcgaagacc
gtgaagtcggacaagactgagaaggctgaggattccgcgaagaccgtgaaatccaccaag
acttcggcgaccaaggccccaaagacgaaggcggcttcgagatcctcttccacctcgaag
gcgaagaaggccagttccaccgaggcaaaagaggctcagtccaaggcggccgagcctaca
gcagccaagacaggcaagtcccggaagaccgacgagacggaaaaagaggaggggaaggct
tccgccaagaaaaccacctccaagaaggcttccgctaagaaggtcgccgccaagaccagc
gaaaaaaccggcaagaagtcctccgcgaagtccgccgaaaagaccgaggacgaggacctg
ccggccgaggaagcctcggctgaggagggcaaagtcgaggaagacaaggtcgacgagtcc
acttccgcctcggatgaggatgaccagtccttgaacgatgacgatgacatggatggcgat
ctggggccaggcagccacgccgtgaatgccctggaccacatcgacgactctgtggagctg
gacgagaacggggacccgatccaagaggatgacgaaaacatcgtcaccgactcggaggaa
aaggacctggaggacgaaggagacgaggaagaggaagcccccgtcgagaaaaagcctttg
gaagagggcgccttcgtggtcagcgaaaaggacgatgacgacgaggaggaaagcgtcact
ccggctggcaaccccaagcgtcgcatcctgacgacgggagccacctccgacccggtcaag
gactacctgaagcaaatcggcagggtcaacctgctgaacgcccagcaggaagtcgacctg
tccgaacgcatcgaagccggtttgtacgcccagcatctcctggacaccaccccggccgac
caaatgactttccagcgcaaacgcgaactcaagtgggcggcgaacgatgggcgcaaggcc
aaagaccacctgctggaagccaacctgcgtctggtcgtctccctggccaagcgttacacc
ggccgtggcatgctcttcctcgacctgatccaggaggggaaccttggtttgatccgcgcc
gtggaaaagttcgactggaagaaaggcttcaagttctccacctacgccacctggtggatc
cgtcaggccatcacgcgcgccatggccgatcaagcccggaccatccgcgtgcccgtccac
atggtggaagtcatcaacaagctttcccgggtccagcggcagatgctgcaggatctgggt
cgcgaacctacgcccgatgaactggcccgcgagctggacatgccggtggaaaaggtccag
gaagtgcagaagtatggccgcgagcccatctccctgcacacgcctttgggtgaagacggc
gactcggaattcggcgacctgatcgaggacaccgacgccatcgccccgtccgaagcggtc
gccttctccctccttcaggaacagttcaagcaagtcctggagaccctcagccctcgggag
gccggagtcatcaaaatgcgttacggtctggaagacggtcagcccaagactttggatgac
atcgggcatgtctatggcgtgacccgcgagcgcatccggcagatcgagtccaagaccatg
tccaagctccgtcatccttcccggtctcagaccctgcaggacttcctcgaccaggagtga
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