Parascardovia denticolens: PSDT_1020
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Entry
PSDT_1020 CDS
T03978
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pdo
Parascardovia denticolens
Pathway
pdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSDT_1020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdo03019
]
PSDT_1020
03016 Transfer RNA biogenesis [BR:
pdo03016
]
PSDT_1020
Enzymes [BR:
pdo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PSDT_1020
Messenger RNA biogenesis [BR:
pdo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PSDT_1020
Transfer RNA biogenesis [BR:
pdo03016
]
Prokaryotic type
tRNA degradation factors
PSDT_1020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH_2
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
BAR05539
LinkDB
All DBs
Position
complement(1245562..1248330)
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AA seq
922 aa
AA seq
DB search
MEGPDIKAVEAVIDNGSFGKRVLRFETGRLAQQADGAVAAYLDNDSMVLSTTTAGSSPKE
NFDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQ
VVETILSINPDDSYDMIAMNAASASTMISGLPFEGPVSGVRLALIDDQWVAFPSWSERER
AVFELVVAGRVLDNGDVAIAMIEAGAGKNAWKLIYDEGMTKPDEVVVAGGLEAAKPFIKV
ICQAQNELKAQAAKDTKDFPLFPEYTEDLYNRIDQIAHSDLDEALSIAEKLPRQDRISQI
KQGVVETLTSEFTGMEDAEKEKEIGNAFKELQRQIVRRRILTQDYRIDGRGLSDIRTLSA
EVDVVPRVHGSALFQRGETQILGVTTLNMLKMEQTTDALSGPDTKRYMHNYEMPPYSTGE
TGRVGSPKRREIGHGALAERALIPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTMS
LLDAGVPLKAPVAGIAMGLVSGEVDGQMVYKTLTDILGAEDAFGDMDFKVAGTSEFITAL
QLDTKLDGIPADILAGALQQAYEARTTILEVIDECIDGVNEMSPYAPRIITTKVPVDKIG
EVIGPKGKMINEIQEKTGAEVSIEDDGTVYIASEGGEAAEAARQIIDQITHPHIPEAGEK
YQGKVVKTTSFGAFVNLTPGTDGLLHISQIRNLANGDRIDAVEDVLREGDTVEVVVQGVD
DKGKISLAIPGFENEEGNGGSRGGDRGGRGSHDRGPRGGRDDRSSRGDRGDRGDRGRSIR
YDREDRGDRDDRRSRSDRFDEDDRDFDDRPSRSDRRPRSSRADRYDDDRRSDDRRNPRYE
EDDRSDRSDRDDRDDRGYRSDRGRGSRSRRSDWSDRSDRGRSGHGRAPHFEEDENYDEYR
AAREERTSRPRRRVRRDFDFDD
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcccgatattaaagcagtggaagccgtcatcgacaacggctcctttggcaag
cgcgttctgcgcttcgagacaggtcgtctcgcccagcaagccgatggggcggtagcggct
taccttgataatgattccatggtcctgtctaccaccaccgctggtagcagccccaaggag
aacttcgatttcttccccttgaccgtggacgtggaggagaagatgtacgcggccggcaag
attcccggctccttcttccgtcgcgaaggccgtccttcgtccgaggccatcctggcctgc
cggatcatcgatcgtcctttgcgcccccttttccctcataccctgcgcaatgaggttcag
gttgtggagaccatcctttccatcaaccccgatgattcttatgacatgatcgccatgaac
gccgcctcggcttccaccatgatctccggcctgcctttcgaaggaccggtctccggcgtc
cgcctggccctcatcgatgatcagtgggtggccttccccagctggtccgagcgtgaacgc
gccgttttcgagctggtcgtggccggccgggtccttgacaacggtgatgtggccatcgcc
atgatcgaggccggcgccggcaagaacgcctggaagctcatctacgacgaaggcatgacc
aagcctgatgaagtcgtggtcgccggcggccttgaggccgccaagcctttcatcaaggtc
atctgccaggcccagaacgagctcaaggctcaggcggccaaggataccaaggacttcccc
ctcttccccgagtacaccgaggacctttacaaccgcatcgaccagatcgcccattccgac
ctggatgaggccctgtccatcgccgagaagcttccccgtcaggatcggatctcccaaatc
aagcagggcgtggtggagactttgacctccgagttcaccggcatggaggacgccgagaag
gagaaggaaatcggcaacgccttcaaggaactgcagcgtcagatcgtccgtcgccgcatc
ctgacccaggattaccgcatcgatggccgtggcctgagcgatatccgcaccctgtccgcc
gaggtggacgtggtgccccgcgttcacggttccgccctcttccagcgtggcgagacccag
atcctgggtgtgaccactttgaacatgctcaagatggagcagaccaccgacgccctgtcc
ggtcctgataccaagcgctatatgcataactatgagatgcccccttacagcaccggcgaa
accggccgcgttggctctcccaagcgccgtgaaatcggccatggggctttggccgagcgt
gctctgatccccgtgctgccttctcgcgaagagttcccttacgccatccgtcaggtctcc
gaggccatcggttccaacggttccacctccatgggctccgtctgcgcctccaccatgtcc
ctgctggacgccggcgttcctctgaaggcccccgtggccggcatcgccatgggcctggtc
tccggcgaagtcgacggccagatggtctacaagaccctgaccgatattctgggcgctgaa
gacgctttcggcgacatggacttcaaggtggccggcacttccgagttcatcaccgccttg
cagctggacaccaagctggacggcatccccgccgatatcctggccggcgccttgcagcag
gcttatgaggcccgcaccaccatcctggaagtgatcgacgagtgcatcgacggcgtcaac
gagatgagcccttacgctcctcgcatcatcaccaccaaggttcccgtggacaagatcggc
gaagtcatcgggcccaagggcaagatgatcaacgagatccaggagaagaccggagccgag
gtcagcatcgaggatgacggaaccgtctacatcgcttccgaagggggagaggccgccgag
gccgcccgccagatcatcgaccagatcacccatcctcacatccccgaggctggcgagaag
tatcagggcaaggtcgtgaagaccaccagcttcggcgctttcgtcaacctgacccctggc
accgatggtctgctgcacatttcccagatccgcaacctggccaacggcgatcgcattgac
gccgtggaggacgtgctgcgcgaaggcgacaccgttgaggtggtcgtgcagggcgtggac
gacaagggcaagatctccttggctatccccggcttcgagaatgaagagggcaatggcggc
tcccgcggtggtgaccgtggcgggcgtggttcccatgaccgtggtcctcgcggcggtcgg
gatgaccgctcttctcggggtgaccggggtgaccggggtgaccggggccgttccatccgc
tatgatcgtgaggatcggggagatcgtgacgatcgccgttcccgctccgaccgtttcgac
gaggacgaccgcgatttcgacgaccgtccttctcgctccgatcgccgtcctcgctcttcc
cgtgccgaccgttacgatgatgaccgtcgttccgacgatcgtcgtaaccctcgctacgaa
gaggatgaccgttccgacaggtccgaccgcgatgaccgcgacgatcgtggttaccgttcc
gaccggggtcgtgggtcccgcagccgtcgttccgactggtccgatcgctctgaccgtggc
cgctccggccatggtcgcgctcctcacttcgaggaggatgagaactacgacgagtaccgt
gccgctcgtgaagagcgcacctcccgtcctcgtcgccgcgtccgtcgtgatttcgacttc
gacgactag
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