Parascardovia denticolens: PSDT_1206
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Entry
PSDT_1206 CDS
T03978
Name
(GenBank) conserved hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pdo
Parascardovia denticolens
Pathway
pdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSDT_1206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdo03019
]
PSDT_1206
Messenger RNA biogenesis [BR:
pdo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSDT_1206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Cuticle_1
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BAR05725
UniProt:
E6K0Q2
LinkDB
All DBs
Position
complement(1477115..1478968)
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AA seq
617 aa
AA seq
DB search
MVRNTNNSNQTKSDGRGKGGNGKAGGRQNQARRGRKGQGSPSQVAQDIQEGRIVPPPKYR
KGSMRIVPLGGLGEIGRNMNVVEYNGHILLIDCGVLFPEEEQPGVDLILPDFSYIRPRLD
KVEALVLTHGHEDHIGGVPYLLRERPDIPLIGSKLTLAFVEAKCREHHIDPIMHPVSGRD
KMKVGPFNLEFITVTHSIPDALAVSVKTPAGHLIDTGDMKLDQLPLDHKITDLREFARLG
EQGVDLLMADSTNAEVPGFVKPETSIGPALDKAFSDAKRKIIVASFSSHVHRVQQVVDTA
HKYGRKVVFVGRSMIRNMGIAADLGYLHLPENTVVDLKESRDIQDDKLVYMCTGSQGEPM
AALGRIADGNHPDIAINEFDTVILASSLIPGNEHEVYKVINKLARLGARVVNRDNAAIHV
SGHSNEGELLYFYNIVQPKCAMPIHGENRHLIANGLIAVKTGVDPNNVILAEDGDVVDLY
HGQAAIVGSVPCGYVYVDGDSVGEITEDELEKRRILSEEGFVSSFVVVDTDKKEVVSGPK
IFINAMAEDVSDFQDVQSQIVTALNDAMLQGTTDTYQLQQKMRRTLGSWIGRTFRRRRPM
VVPVVADLAKDLIPRNR
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggtgagaaacacgaataattccaatcagacgaaaagcgatggcaggggcaaaggcggc
aacggcaaggccggcggccgtcagaaccaggcccgccgggggaggaagggccaaggcagc
ccctcccaggtggctcaagacattcaggaagggaggatcgtccctcctcccaagtaccgc
aagggttccatgaggatcgtccctttgggcggcctgggggagatcggccgtaacatgaac
gtggtcgaatacaacggccatatcctcctcatcgactgcggcgtcctcttccctgaagaa
gagcagccgggcgtggacctgatcctccccgatttctcttatatccgtccccgcctggat
aaggtggaagccctggtcctgacccacggccacgaggaccatatcggcggcgtcccttac
cttctgcgcgaacgccctgacatccccctgatcgggtccaagctgaccctggccttcgtc
gaagccaaatgccgggagcatcacatcgaccccatcatgcatccggtctccggccgggac
aagatgaaggtgggtcctttcaacctggagttcatcaccgtcacccattccatcccggac
gccctggccgtgtccgtcaagaccccggccgggcacctgatcgacaccggcgatatgaag
ctggaccagctgcctttggaccacaagatcaccgacctgcgtgaattcgcccgcctcggc
gaacaaggggtggacctgctcatggccgattccaccaacgccgaagtgccgggcttcgtc
aagccggagacctccatcgggccggccttggacaaggccttctccgacgccaagcgcaag
atcatcgtcgcctccttctcctcccacgtgcaccgcgtgcagcaggtggtggacaccgcc
cacaagtacggccgcaaggtggtcttcgtgggccgttccatgatccgcaacatggggatc
gcggccgacctgggctatctgcatctgccggagaacacggtggtggacctgaaggaatcc
cgcgacatccaggacgataagctggtctacatgtgcaccggctcccaaggcgaacctatg
gccgctttgggccggatcgccgacggcaaccatccggacatcgccatcaacgagttcgat
accgtcatcctggcctcctccctcatccccggcaacgagcatgaggtctacaaggtcatc
aacaagctggcccgtctgggggcccgggtggtcaaccgcgacaacgcggccatccacgtc
tccggccacagcaacgaaggcgagctcctgtacttctacaacatcgtccagcccaagtgc
gccatgcccatccatggggagaaccgccacctgatcgccaacggcctcatcgccgtcaag
accggggtggaccccaacaacgtgatcctggccgaagacggggacgtggtggacctctac
cacggtcaggcggccatcgtcggctccgtcccctgcggttacgtctatgtggacggcgat
tccgtgggcgagatcaccgaagacgagctggagaagcgccggatcctgtcagaggaaggc
ttcgtctcctccttcgtggtggtcgatacggacaagaaggaagtcgtctccgggcccaag
atcttcatcaacgccatggccgaagacgtgagcgatttccaggacgtccagtcccagatc
gtcaccgccctgaacgacgccatgttgcaggggaccaccgacacctaccagctgcagcag
aagatgcgccggaccctgggatcatggattggccgcaccttccgccgccgccggcctatg
gtggtgcccgtggtggctgatttggctaaggacctgatcccccggaaccgttga
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