KEGG   Penicillium digitatum: PDIP_02020
Entry
PDIP_02020        CDS       T04849                                 
Name
(RefSeq) Pre-mRNA splicing factor, putative
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pdp  Penicillium digitatum
Pathway
pdp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pdp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PDIP_02020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pdp03041]
    PDIP_02020
Spliceosome [BR:pdp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    PDIP_02020
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 PRP4 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_HPS5 Beta-prop_TEP1_C Beta-prop_EML Beta-prop_IFT122_1st NBCH_WD40 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_DCAF4 WD40_like WDR54 WD40_RFWD3 Nbas_N Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 26228525
NCBI-ProteinID: XP_014538951
UniProt: K9GKV8 A0A7T6XUP3
LinkDB
Position
Unknown
AA seq 520 aa
MMHPSRQAYVEETEDTDMGGISYADLPMDQDYDMPSMAAGIPTERASAILSQFERKRRAA
AMVVPTDDTRVRARLRELGEPITLFGEGPSERRDRLRELLTDMAEQQGGVEIEMEEAEEE
GEQQEEFFTEGGNDLLEARKEIARFSLARAKARVARLKDESTITLRTHIKHRKAVKEKLQ
GFDLYGSQIAGDRPVSICRFAPDGQTIAAGNWSGGIKLLSVPNLEEKASFNAHTDRVGGL
SWFPGATLPSSNVSPSTVNLISGGGEGNINLWALDQEKPLATLIGHSGRVCRTEFHPSGR
FAASASFDSSWRLWDIETATELLLQEGHSREVYTVAFNNDGSLVASGGFDSIGRIWDLRT
GRNVMILDGHIREIYGMDWGVDGHRVLSGSGDGWVKCWDLRQMKETGGIGAHKSVVSDLR
WYKGVESASFLPSTDGGMDIDGAPLAADKAAEAPSPKKSGTFFVSSGFDKCVNIFSADDW
SLVKSLSGHSGNVLSTDISDDAKWIASCGHDRTVKLWGIE
NT seq 1563 nt   +upstreamnt  +downstreamnt
atgatgcacccatcgcgtcaggcttatgtcgaggagacggaggacacagacatggggggc
atcagttatgccgatcttcccatggaccaagactacgatatgccctctatggcagcgggt
atcccaactgagcgggcctccgctattctatcgcaattcgaacggaaacggagagcagca
gcgatggtggttccaacagatgacacacgagtgcgcgcacgactacgagagctcggggaa
cccatcacgctatttggtgaagggccatcagagcggcgcgatcgtctacgtgaactcttg
accgacatggcggagcaacaaggcggagtcgagatagaaatggaagaagcagaggaggaa
ggggaacaacaagaagaatttttcacagagggcgggaacgatttgctcgaggcgcggaaa
gaaattgcgcgcttttctttggcgcgcgcaaaggctcgagtggcccgtctgaaagacgaa
tcaacaattacacttcggacgcatatcaagcatcgcaaagctgtcaaggagaagctacaa
ggattcgatctttacgggtctcagattgctggcgatcgtccggttagcatttgtcgattc
gcgccggatggacagacaattgctgctggaaattggagcggtgggatcaaattgctcagc
gtgcccaatctggaagaaaaagcgagtttcaacgcgcacacagatcgagtggggggtttg
tcgtggttccccggcgccaccctccccagctcgaacgtctcaccctcgactgtcaatttg
atctccggaggcggtgaaggaaatattaatctctgggcccttgatcaagaaaagccgctg
gctacgttaattggtcactcggggcgtgtatgccgcaccgagttccacccttcaggtaga
tttgcagcatcggcatccttcgacagctcatggcggctatgggatattgaaacagcaacc
gagctgctcctgcaagaaggccattcgcgagaggtctatacagtggcgttcaacaacgat
ggctctctcgtggctagtggtggattcgacagcatcggacgtatctgggatctgcggaca
ggacgcaacgtgatgatcctcgacggccacattcgcgagatctacggtatggactggggc
gtggatggtcaccgagtgctgtctggttccggcgatggctgggtcaaatgctgggacttg
cgacagatgaaggagactggtgggattggtgcccacaagagcgtggtatcggatctccgc
tggtacaaaggtgtagaatctgcgtcattcttgccttctacggatggcgggatggacatt
gatggcgctccactagctgctgataaagcagcggaagcgccctcacccaagaaatcaggc
acattctttgtgagcagtggatttgataagtgtgtcaacatctttagcgcggatgactgg
tcccttgtgaagtcgctgagcggccactcgggcaacgttctcagtacggatatcagtgac
gatgcaaagtggattgctagctgtggtcacgatcgtaccgtgaagctttgggggattgaa
tga

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