KEGG   Penicillium digitatum: PDIP_06700
Entry
PDIP_06700        CDS       T04849                                 
Name
(RefSeq) Polymerase (RNA) II (DNA directed) polypeptide D
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
pdp  Penicillium digitatum
Pathway
pdp03020  RNA polymerase
pdp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pdp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PDIP_06700
  09124 Replication and repair
   03420 Nucleotide excision repair
    PDIP_06700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pdp03021]
    PDIP_06700
   03400 DNA repair and recombination proteins [BR:pdp03400]
    PDIP_06700
Transcription machinery [BR:pdp03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     PDIP_06700
DNA repair and recombination proteins [BR:pdp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      PDIP_06700
SSDB
Motif
Pfam: RNA_pol_Rpb4 Cut8
Other DBs
NCBI-GeneID: 26228993
NCBI-ProteinID: XP_014538055
UniProt: K9H8R7 A0A7T6XV67
LinkDB
Position
Unknown
AA seq 148 aa
MSVQLPPPTHRKRALPQGELEAASTLKLGADQHTHTLSLSEARLVIHKVLENKRRGGNKY
EEPENLTKTLDYLDVFARFKDEENIKAVERLLNSHTELEMFERSQLGSLCCDNAEEAKSL
IPSLQNKISDGDLQELLDELTKLRNFTE
NT seq 447 nt   +upstreamnt  +downstreamnt
atgagcgtccaactgcccccacccacgcaccgcaagcgcgcgctgccgcaaggagagctc
gaagccgcctctacgctcaagctgggcgctgaccagcacacgcacaccctctcactttca
gaagcccgactcgttatccacaaggtcttggagaacaagcggcgcgggggcaacaaatac
gaagagccggagaatttgaccaaaacgttggattacttggatgtttttgcccggttcaag
gacgaggagaacatcaaggcagttgaacgccttttgaactctcacacagagctggagatg
tttgagcggtcgcagctgggtagtctgtgttgcgacaatgccgaggaggccaagtctctc
attccgagtcttcagaataagatctcggatggagatttgcaagagctgctggatgagttg
accaagctgcgcaacttcacggagtaa

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