KEGG   Penicillium digitatum: PDIP_11640
Entry
PDIP_11640        CDS       T04849                                 
Name
(RefSeq) Endoribonuclease ysh1
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pdp  Penicillium digitatum
Pathway
pdp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pdp00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    PDIP_11640
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pdp03021]
    PDIP_11640
   03019 Messenger RNA biogenesis [BR:pdp03019]
    PDIP_11640
Transcription machinery [BR:pdp03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     PDIP_11640
Messenger RNA biogenesis [BR:pdp03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     PDIP_11640
    U7-dependent histone pre-mRNA processing factors
     PDIP_11640
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B Lactamase_B_6 RMMBL Anti-Pycsar_Apyc1 Lactamase_B_2 Lactamase_B_3 FA_desaturase LegC3_N
Other DBs
NCBI-GeneID: 26229487
NCBI-ProteinID: XP_014538549
LinkDB
Position
Unknown
AA seq 862 aa
MTSKRKASAMGSAVDDEPVDPSDELAFYCLGGGNEVGRSCHILEYKGKTVMLDAGMHPAK
EGFSALPFFDEFDLSTVDVLLISHFHVDHSSALPYVLSKTNFKGRVFMTPATRAIYKWLI
QDNVRVSNTSSSSDQRTTLYTERDHLSTLPLIETIDFYTTHTINGIRITPYPAGHVLGAA
MFKIDIAGLVTLFTGDYSREEDRHLIPAAVPSGTKIDVLITESTFGISSNPPRLEREAAL
MKSITSILNRGGRVLMPVFALGRAQELLLILDEYWETHPELQKFPIYYIGNMARRCMVVY
QTYIGAMNDNIKRLFRQRMAEAEASGNKSVSVGPWDFRFVRSLRSLERFDDVGGCVMLAS
PGMLQTGTSRELLERWAPSDRNGVVMTGYSVEGTMAKGLLNEPDQIPAVMSKVSTGHGRG
RVPGVNDEDQKVMIPRRCTVDEVSFAAHVDGVENRTFIEEVAAPVVILVHGEKHQMMRLK
SKLLSLNADKAVKVKVYTPANCDEVRIPFKKDKIAKVVGKLAELAPPSENDDAQLMAGVL
VQNGFNLSLMAPDDLHEYAGLTTTTITCKQHITLSSASMDLIRWALEGTFGAIEEIGNSK
KTEPNGKKNMDTDDIPKQEDADEEIPSDETQTFLVMGCVYLRHHSRTREVELEWEGNMMN
DGVADAVMAVLLTVESSPASVKQSAKNKHHHHHHDDDDVEIPSLPNPHSQSGPQERLARM
LMMLEAQFGGDNIGPIERPRVPADLALGPQEDGEEMNEERIAEIEAAELDRLITMGVPVP
GIEIRVDKHIARVWLEDLEVECVNPVLRDRIRVVVERAVETVAGLWAESSIHQDTALSGS
AIGPKGVELADRKKAAAIEAHA
NT seq 2589 nt   +upstreamnt  +downstreamnt
atgacatccaagcgcaaagcttcagcaatgggatcggctgttgacgatgagcccgttgac
ccatcagacgaactggcattctactgtcttggcggcggcaatgaagttggacggagttgc
catatcctggaatataagggcaagacagttatgctcgacgcgggcatgcacccggcgaaa
gaaggcttctccgcacttcctttctttgatgagttcgatctgagcacagtggatgttctt
ctaatcagccatttccacgttgatcattcttccgccctcccttatgttctcagcaagacg
aatttcaaaggaagagtcttcatgaccccggcaacacgagcaatctacaaatggctcatt
caagacaatgtccgagtcagcaacacatcctcttcttccgatcaacgcactacattatac
accgagcgtgatcacttatcaacacttccattgattgaaacaattgacttttacaccacg
catacgatcaatggcatccgtattaccccgtatcccgccggccatgttcttggagctgcc
atgtttaaaattgatattgcaggacttgtgactttgttcacaggagactactctcgcgag
gaagacagacacttgattcctgccgcggtgcccagcggcacaaagatcgatgttctcatt
acggaatctacctttggcatttcatccaatccacctcgattggaacgtgaggcggctttg
atgaagtcaatcacaagcattctcaaccgcggaggtcgagttctgatgcccgttttcgct
ctcggtcgtgcccaagagctgcttcttatccttgatgaatattgggaaacccacccagaa
cttcagaagtttcctatctattatatcggaaacatggcacggcgatgcatggtcgtgtat
caaacatacattggtgccatgaacgataacataaagcgactcttccggcagcgcatggcc
gaggccgaggccagcggcaataagagcgtgagtgtcggcccatgggatttccgatttgtt
cgaagtctccgcagtttggagcgtttcgatgatgtcggaggatgtgtcatgcttgcctcc
cccggtatgttgcagacaggaacaagtcgtgagctgctggaaaggtgggcaccaagtgat
cgcaacggcgttgtcatgaccggttacagcgttgaaggtactatggctaagggattgctc
aatgagcctgatcagatcccggccgtcatgtccaaggtttccacggggcatggtcgtggt
cgtgttcccggagtgaatgatgaggatcaaaaggtcatgattcctcgccgttgcactgtt
gacgaggtcagttttgcagcccatgttgatggcgttgaaaatcgtactttcatcgaggag
gtagcagcaccagttgtgatcctcgtccacggcgaaaaacatcagatgatgagactgaag
tcgaaattgcttagtcttaacgcagacaaggcggtcaaagtcaaagtctatactccagca
aattgcgacgaagttcgcattcctttcaaaaaagataaaattgccaaggttgtcggcaag
ctcgcagagcttgcacctccatcggagaatgatgatgcccagctcatggctggagtccta
gttcaaaatgggttcaacttgtcgttgatggcacctgacgacttacatgagtatgcaggc
ttgacaactacgacgataacttgcaagcaacatatcactctcagctctgcgagtatggat
ttgatccggtgggccctcgagggaactttcggggccatcgaagaaattggaaacagcaag
aaaactgagccaaacggcaagaaaaacatggatactgacgacatcccaaagcaagaggac
gccgacgaggagattccatcagatgaaacacaaacattccttgtcatgggatgtgtgtat
cttcgccatcactcgcgcacccgtgaagtcgagttggaatgggaaggtaacatgatgaac
gacggagtggcagatgcagtcatggctgttctgctcacagtcgaaagcagcccggcctcc
gtaaagcaatcggccaaaaacaagcatcaccaccatcaccatgacgatgacgacgtggaa
atcccctcacttccaaaccctcattctcagtctggaccccaagagcgacttgcacgtatg
ctgatgatgctcgaggctcaatttggcggcgacaacattggccccattgagcgcccgcga
gtcccggcagatcttgcactcggtccacaagaagacggcgaagagatgaacgaagaacgc
attgccgaaattgaggctgcggagctggatcgtcttattacaatgggtgttcctgtccct
ggtattgagattagggtggacaagcatattgcccgtgtgtggcttgaggacctggaagtc
gagtgcgtgaaccctgtcctgcgagatcgcattcgtgtagtcgttgagcgggccgttgag
actgtcgctggactgtgggcggagagctcaattcatcaggacacggcgcttagtggctct
gccatcgggccgaagggggttgaactggcggataggaagaaagcggctgccatcgaggct
catgcttga

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