Penicillium digitatum: PDIP_12260
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Entry
PDIP_12260 CDS
T04849
Name
(RefSeq) ATP dependent RNA helicase (Dbp1), putative
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pdp
Penicillium digitatum
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_12260
03041 Spliceosome [BR:
pdp03041
]
PDIP_12260
03036 Chromosome and associated proteins [BR:
pdp03036
]
PDIP_12260
Enzymes [BR:
pdp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PDIP_12260
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
PDIP_12260
mRNA cycle factors
Common to processing body (P body) and stress granule
PDIP_12260
Spliceosome [BR:
pdp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
PDIP_12260
Chromosome and associated proteins [BR:
pdp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
PDIP_12260
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
Motif
Other DBs
NCBI-GeneID:
26229549
NCBI-ProteinID:
XP_014537839
UniProt:
K9GIW4
LinkDB
All DBs
Position
Unknown
AA seq
689 aa
AA seq
DB search
MADGLQMGNLSLNESQHAPQGNAPVGRAAYIPPHLRQRGPGSGPAPGPSANADAAPSGPG
FGGPRDSGGNWANANAPNFSPRGPANGMTSWTPDGKLRPFNPNAYGNPGSSYGGGGSSGS
GGYSGGGGSQQARGSGDGQWRDGKHVPGPANARLERELFGVPNDPSKQQTGINFANYDDI
PVEASGNDVPEPVTQFTNPPLDDHLIANIKLASYVIPTPVQKYSVPIVMNGRDLMACAQT
GSGKTGGFLFPILSQAFQSGPSAAPAQGGGGGQFSYGRQRKAYPTSLILAPTRELVSQIF
EEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLANIKY
LVLDEADRMLDMGFEPQIRRIVEGEDMPGVDDRQTLMFSATFPRDIQMLARDFLKDYIFL
SVGRVGSTSENITQKVEYVEDADKRSVLLDILHTHGSTGLTLIFVETKRMADSLSDFLIN
QRFPATAIHGDRTQRERERALELFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDID
DYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLLELLKEAHQEIPAFLESIAREGSGFSG
RGRGGGGRGRGAAATRDVRRIPGGMGGGFGGAGGYGGSGGAAPSYGSGYGGAAAPSYGGG
GGGGGGAGYGGGGGSYGNPSGSSGPSSWW
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggccgacggcttgcaaatgggaaacctttccctcaacgagtctcagcacgctccccag
ggtaacgcccctgtgggccgtgctgcctacattcctcctcaccttcgccagcgtggaccc
ggttctggtcccgcccctggccccagcgctaacgccgacgccgccccttctggacctggc
ttcggtggtcctcgtgacagtggtggcaactgggccaacgctaacgctcccaacttcagc
cctcgtggccccgcgaacggtatgaccagctggactcccgatggaaaactccgacccttc
aatcccaatgcttacggaaacccaggatcttcttacggtggtggtggcagcagcggcagc
ggtggctacagcggtggtggtggctcccagcaagctcgtggctcaggcgatggccagtgg
cgcgacggcaagcacgttcccggtcccgccaatgctcgcctggagcgtgagctattcgga
gttcccaacgacccctctaagcagcagactggaatcaacttcgccaactacgatgatatc
cccgtcgaggcctccggaaatgatgtccccgagcctgtaacccagttcactaaccctcct
ctggacgaccacctgatcgcgaacatcaagcttgccagctatgtcatccctaccccagtt
cagaagtactcggttcccatcgtcatgaatggtcgtgatcttatggcctgtgcccagact
ggttccggaaagactggtggcttccttttccctattctctcccaggctttccagagcggt
ccctctgccgcccctgcccagggtggtggtggtggccaattcagctacggccgccagcgt
aaggcttaccccacctctctcattctcgctcccacccgtgagctggtttctcagatcttc
gaggaggctcgtaagttcgcttaccgctcgtgggttcgcccttgcgttgtatacggtggt
gcagacatcggttcccagcttcgtcagattgagcgtggttgcgatctcctcgttgctacc
ccaggtcgtctagttgatctcattgagcgtggacgcatttccctggctaacatcaagtac
cttgtccttgacgaggctgatcgcatgctggacatgggtttcgagccccaaattcgccgt
attgttgagggtgaggatatgcccggtgttgatgatcgccagacactcatgttctcggcc
accttcccccgcgacatccaaatgcttgctcgtgatttccttaaggactacatcttcttg
tccgttggccgtgtcggaagtacttcggagaacattacccagaaagtcgagtatgtcgag
gacgccgacaagcgctccgtcctgctagacattctccacactcacggcagcactggtctg
actcttattttcgttgaaaccaaacgcatggccgactcactctccgacttccttattaac
cagcgcttccctgcgaccgccattcacggtgatcgtacccagcgcgagcgtgagcgtgct
ctggagctcttccgtaacggtcgctgcccaattctggttgctactgctgttgctgcccgt
ggtctcgatatccccaacgtgacccacgtcatcaactacgatcttcccaccgatattgat
gactacgttcaccgcattggtcgtactggtcgtgccggcaacaccggtattgccactgct
ttcttcaaccgtggcaaccgtggtgttgttcgtgacttgctcgagctcctgaaggaggcc
caccaggagattcctgctttcttggagagcattgcccgcgaaggtagcggattcagcggt
cgtggccgtggtggtggtggccgtggccgtggcgctgctgccactcgtgatgtgcgtcgt
atccctggtggcatgggtggtggcttcggcggtgccggcggctacggtggttccggcggt
gcagctccctcatacggcagcggctacggtggtgccgccgccccctcctacggtggtggt
ggtggtggtggtggtggtgctggctatggcggcggcggcggtagctatggcaacccctcc
ggctcctccggtccatcttcctggtggtaa
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