Penicillium digitatum: PDIP_12850
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Entry
PDIP_12850 CDS
T04849
Name
(RefSeq) ATP dependent RNA helicase (Dob1), putative
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pdp
Penicillium digitatum
Pathway
pdp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDIP_12850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_12850
03041 Spliceosome [BR:
pdp03041
]
PDIP_12850
03009 Ribosome biogenesis [BR:
pdp03009
]
PDIP_12850
03016 Transfer RNA biogenesis [BR:
pdp03016
]
PDIP_12850
Enzymes [BR:
pdp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PDIP_12850
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PDIP_12850
Spliceosome [BR:
pdp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PDIP_12850
Complex C
U4/U6.U5 tri-SnRNP related factors
PDIP_12850
Ribosome biogenesis [BR:
pdp03009
]
Eukaryotic type
Pre-60S particles
Helicases
PDIP_12850
Transfer RNA biogenesis [BR:
pdp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PDIP_12850
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
VasI
ATPase_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
26229608
NCBI-ProteinID:
XP_014537898
UniProt:
K9H1S7
A0A7T6XP14
LinkDB
All DBs
Position
Unknown
AA seq
1081 aa
AA seq
DB search
MDELFDVFEDQPQAVKPSEVAPKRLKKNKNKKRQMNGDVKKTADAQPEQKEDVAMTDASA
GEVESADAEAPTTPSEPEQPETKRPRLDQEPEPVVADSFETEQEREIAASGGLSGATDTS
AVVVSHQVRHQVAIPPNYPYVPISQHKPPANPAKTWPFTLDPFQQVAVSSIQREESVLVS
AHTSAGKTVVAEYAIAQSLKQNQRVIYTSPIKALSNQKYREFAAEFGDVGLMTGDVTINP
TATCLVMTTEILRSMLYRGSEIMREVQWVVFDEIHYMRDLNRGVVWEETIILLPDKVRYV
FLSATIPNAMQFAEWIVKMHNQPCHVVYTNYRPTPLQNYFFPAGGEGIHLVVDEKGVFRE
ENFQKAMSAIADKKGDDPADALAKRKGKGKDKQINKGGNKGPSDIFKIVRMIMLKNYNPV
IVFSFSKRECEAGALQMSKLTFNDDSEKNMVSKVFESAIEMLSPEDRQLPQIQNILPLLQ
QGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGTSQ
RWVTPSEFIQMSGRAGRRGLDDRGIVIMMVGEEMDPAVAKEIVRGEQDRLNSAFHLGYNM
ILNLMRVEGISPEYMLERCFKQFQNTGSVSGLEKELESLEEKRTNMIISDEGTIREYYDL
RKQLDAFADDVQHVITHPNYSLTFIHPGRLIHVKYKDADFGWGVVINQKKRKQASNDTEK
LTPHQSYIVDVLMRTTEGSSIGTKSFQDLPPGVHPAKEGEPARSEVVPIVLSCITEISHI
RIMLPKDITSPSSRNDVMKSVGEVKRRFPDGVPLLDPIENMQIKDESFKKLLRKIEVLES
RLLSNPLHNSPRLTELYEQYAEKVDLTVKIKAIKKQIAEAMSILQLDELKCRKRVLRRFG
FINEAEVVQLKARVACEISTGDELMLSELLFNGFFNNLTAEQIASVMSCFVFEEKVKEAP
ALAKDELAKPLKDIQSQARIIAKVSQESKMAVNEDEYVQSFHWELMEVIYEWTQGKSFAD
ICKMTDVYEGSLIRVFRRLEECLRQMAQAAKVMGSEDLESKFEEALGKVRRDIVAAQSLY
L
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atggatgagctatttgacgtgtttgaggatcagcctcaggcggttaaaccgtcagaagtt
gcgccaaaacgcttgaagaagaacaagaacaaaaaacgacagatgaatggagatgtgaag
aaaaccgcagatgcccaacctgaacagaaggaggatgttgcaatgactgatgcatctgct
ggggaagttgaatcggcagatgccgaagcccccactactccttccgaaccagaacagccc
gagacgaagcgacctcgattggatcaggaacccgagccagtagtcgccgattctttcgaa
accgagcaagagcgcgaaatcgcagcctctggaggactttcaggcgccacagacacatct
gcagtcgtggtgtctcatcaagtgcgccatcaagtcgcaatcccaccaaactacccttac
gtgcctatctctcagcataaacctccggcgaaccccgcaaagacatggcccttcacactt
gatcctttccaacaggtcgcagtttcttcaatccagcgcgaggaaagtgtgctggtgtca
gctcatactagtgccggaaagaccgtggtggcagaatacgcgattgcgcaaagtttgaaa
caaaaccagcgagtgatctacactagtccaatcaaagcgctcagcaatcagaagtaccgt
gaatttgctgctgagtttggcgatgtcggtctgatgactggtgatgtgaccatcaacccc
actgctacctgtcttgttatgactacagagattcttcgctccatgttgtaccgtggctct
gagattatgcgtgaagttcagtgggtagtctttgatgaaattcactacatgcgagatttg
aatcgtggtgttgtttgggaagagaccataattctgttacccgacaaggtccgctatgtt
ttcctgtccgccactatcccgaacgcaatgcaatttgccgagtggattgtgaagatgcac
aatcaaccctgccatgttgtttacaccaactaccgtccgaccccactccagaactacttc
ttccccgctggtggagaaggtatccatcttgttgtggatgaaaaaggagtctttcgcgag
gagaacttccagaaagcaatgagcgcaatcgctgacaagaaaggtgacgacccggccgac
gctttagccaagcgtaagggcaagggcaaggacaagcaaatcaacaagggtggaaataag
ggcccatcggatatcttcaagatcgtcaggatgatcatgcttaagaactacaaccccgtc
attgtcttcagtttcagcaagcgagagtgcgaagcaggtgctttacagatgagcaaattg
acttttaacgacgattccgagaaaaacatggtgtccaaggttttcgaaagcgccattgaa
atgttgtctccagaagatcgtcaattgccacagatccaaaacatcctcccgctattgcaa
caaggtatcggtgttcatcactcaggattgctaccaattcttaaggaaaccattgagatt
ctgttccaagagggtcttatcaaagtcctatttgcaaccgagactttctccattggtctc
aacatgcctgcgaagactgtagttttcaccagcgtccgcaagttcgatggaactagccag
cgttgggttactccgtctgaattcatccagatgtctggtcgtgccggtcgtcgaggtctc
gatgaccgcggtattgtgatcatgatggtcggagaggagatggacccagcagtggcgaag
gagatcgtgcgcggtgaacaggaccgactcaactccgcattccaccttggctacaacatg
attctcaatctgatgcgcgtagagggcatctcgcctgaatacatgctcgaacgatgcttc
aagcagttccagaacactggaagcgtttcaggcctggagaaggagctcgagagtcttgag
gagaagcgcaccaatatgatcatatcagacgagggtaccatccgtgaatactacgaccta
cggaaacaactggacgcatttgccgacgatgttcagcatgtcatcacccacccaaattac
tctttgactttcattcaccctggacgactgatccacgttaagtacaaggatgctgatttc
ggttggggtgtggtgatcaaccagaagaagcgcaagcaagcgagtaatgacactgagaaa
ttgactcctcaccaatcctacattgttgatgtcttgatgaggactacagaagggtcatcc
attggcacgaagtctttccaagatcttccgccaggtgttcaccccgcaaaggaaggggaa
cctgctcgcagtgaggttgtgcccattgtgctgagctgcatcacggaaatctctcacatt
cgcatcatgctaccaaaggatatcacgtcacccagctctcgaaatgatgttatgaagtct
gttggtgaggttaagaggcgcttcccagacggtgttccgctacttgatccgattgagaac
atgcagatcaaggatgaaagcttcaagaagctgctacgaaaaatcgaggttcttgagtct
cgcctgctgagtaaccctttgcacaattcgccccggttgactgaattgtacgagcaatat
gccgagaaggtggacctaactgtaaagatcaaggcgattaagaagcagattgcagaagcc
atgtcgattttgcagcttgatgagctgaagtgtcgtaagcgtgtgctccgtcgtttcgga
tttatcaacgaagccgaagttgtgcagttgaaggctcgtgttgcttgtgagattagcaca
ggtgacgagctcatgctgagcgagttgctgtttaatggtttcttcaacaacttgactgct
gagcaaatcgcttctgtcatgagttgtttcgtgtttgaagaaaaggtcaaggaagcccct
gctttggccaaggatgagttggcgaagccactgaaagatatccaatcacaggcccgcata
atcgccaaggtgtctcaggagtctaagatggccgtgaatgaggatgagtacgttcagagc
ttccactgggagttgatggaggtgatctatgagtggacccagggcaagtcttttgcagat
atctgtaaaatgaccgatgtctacgaaggtagcttgatccgtgtcttccgccggttggaa
gagtgtttgcggcagatggcgcaagctgccaaggtgatgggcagcgaggacctggagagc
aagttcgaggaggccctgggcaaggtccgccgcgatattgttgctgcccagtccctgtac
ttgtag
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integrated database retrieval system
