Penicillium digitatum: PDIP_14370
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Entry
PDIP_14370 CDS
T04849
Name
(RefSeq) MRNA splicing factor RNA helicase (Cdc28), putative
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pdp
Penicillium digitatum
Pathway
pdp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PDIP_14370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdp03041
]
PDIP_14370
Enzymes [BR:
pdp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PDIP_14370
Spliceosome [BR:
pdp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PDIP_14370
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
WHD_HA2
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
AAA_30
Cas3-like_C_2
T2SSE
SecA_DEAD
SRP54
ABC_tran
TsaE
AAA_23
Flavi_DEAD
AAA_16
Motif
Other DBs
NCBI-GeneID:
26229760
NCBI-ProteinID:
XP_014537606
UniProt:
K9H186
A0A7T6XF74
LinkDB
All DBs
Position
Unknown
AA seq
1125 aa
AA seq
DB search
MENRIFVSDNLLRLTGASEPTIIDFVLATASSAKSTSSLQDTLVSFLDGVDASSAEIGLF
ARELHARMGKGAQPSASTSKPATSKESTKKKYRLVDMGEDQPEPAPLLGPTNIEADRERR
RRRDRDSDKDRTSSRRDPEPRSRGEKDDSRKRDRSRDAESHDRPRTRKLRKKGSQDFDDR
WGDEEILEEEMSPQEFEVSPSKRTRLDDGSASPNPTSPADDVDIDPKTKQEIDRQRDLRE
RDEFAKRLANRESNKSKKIVEDRTRDSEAARRRALGDDASARASTMPDLRERSRQEYLKK
RETERLALLRRQVVEEAAELRENPNLSRKEKEEFARNREVLRLAEERLRIDDHRDGYQMP
SDYITEKGKIDRKKKEEALYKRYVERDELGQERFVTEHEEWELEQAAKAKAQIKKAEFVD
EGDYEYVFDDSQQINFVMDAKLEGTQKPLTKEQLRFKEQVDAAEKKALSMEETRKSLPIY
QFRDQIIQAVAQHQVLIIVGETGSGKTTQIPQYLHEAGYTKDGLKIGCTQPRRVAAMSVA
ARVADEMGTKIGNEVGYAIRFEDNTSDKTILKYMTDGMLLRELLTEPDLSQYAALMIDEA
HERTVPTDIACGLLKDIAKARPDLKLLISSATMDAQKFQEYFDNAPIFNIPGRRYPVDVH
YTSQPEANYLAAAITTVFQIHVSQGPGDILVFLTGQEEIEAAEQSLQETARKLGSKIPEM
IIAPIYANLPSELQTKIFEPTPPKARKVVLATNIAETSLTIDGIVYVIDPGFVKENVFNP
RSGMESLVVTPCSRASANQRAGRAGRVGPGKCFRLYTKWAYYNELEENTTPEIQRTNLNG
VILMLKSLGIDQLLDFDFMDPPPAETIIRALEQLYALGALNDRGELTKVGRQMAEFPTDP
MLAKAILAADKYGCVEEVLSIVSMLGEGSALFFRPKDKKIHADSARNRFTIKDGGDHLTL
LNVWNQWVDSDFSTIWAKENFLQQRSLTRARDVRDQLAKLCDRVEVAVSTCGSTNIQPIQ
KAITAGFFPNAARLQRGGDSYRTIKNGQSVYLHPSSTLMEINPRWVIYFELVLTSKEYMR
SNMPLQPEWLVEVAPHYYKKKDLESLGLDRKMTKGQGVAGEKSRE
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataggatctttgtatcggacaatctcctccgccttacgggtgcgtcagagccc
accatcatcgatttcgtgcttgcgaccgccagctcagccaagtcgacctcctccctccaa
gataccctcgtgtctttcctggatggcgtagacgctagctcagctgaaattggtctcttc
gcccgggagcttcatgcccgcatgggcaagggcgcacagcccagtgcgtctacctccaaa
cccgcgacgagcaaggaatctacgaaaaagaagtaccgtctggtggatatgggcgaagac
cagccagagcctgcccccttgctaggacccaccaatatcgaggcagaccgagagcgacgg
aggagacgggacagagacagcgacaaggacaggaccagtagcaggcgagaccccgagcct
cggagtcgcggggaaaaggatgacagccgcaagcgagaccgaagccgcgatgcagagagc
cacgataggcctcggacgaggaagctccgcaagaagggctctcaggacttcgacgatcga
tggggtgacgaagagatactcgaagaggagatgtccccgcaggaattcgaagtatccccc
tcgaagcgcacacgactcgacgatggttccgcatctcccaatcccacgtcaccggctgac
gatgtcgatatcgaccctaagaccaagcaagagatcgaccgccaacgggatcttcgtgaa
cgagatgagtttgccaaacggctggccaacagggaaagtaacaagtcgaagaagattgta
gaggatcggacgcgtgacagcgaggctgcacgacgacgtgcactgggcgatgatgccagc
gcgcgggcttcgacgatgcccgatctgcgagaaagatctcgacaggagtacttgaagaag
cgtgagacagaacgcttagcactgctgcgaagacaggttgtagaggaggccgcggagttg
cgtgagaacccgaatttgtctcgcaaggagaaggaggagttcgcgcgcaaccgggaagtc
cttcgtctcgccgaggaacggcttcggatcgatgaccaccgtgatggttatcagatgcca
tctgactacattacggaaaaggggaagatcgaccggaagaagaaggaagaggctctatac
aagcggtatgtcgagcgtgatgagctaggccaggagcgattcgtcacggagcacgaggag
tgggagctggagcaggcggccaaggccaaggcacagatcaaaaaggccgagttcgtggat
gagggagactatgaatatgtcttcgacgattcacagcagatcaactttgtcatggatgcc
aaactcgagggcacgcaaaaaccactgacgaaggagcagctgcggttcaaggagcaggtc
gatgcagcggagaagaaagccctctcgatggaggaaacacgcaagagtttgcccatttat
caattccgtgatcagatcatccaggctgtggcacagcatcaagttttgattatcgttggt
gaaactggttctggaaagaccacacagatcccacaatacctccacgaggccggttatacc
aaggatggcctcaagatcggatgcacgcagccgcgacgagtggctgccatgagtgttgct
gctcgtgtggcggatgaaatgggcacgaagattggaaatgaagttggttatgccatccga
ttcgaggataacaccagcgacaagaccatcctcaagtacatgaccgatggcatgttgctg
cgagaactgttgaccgagccggacttgagccagtacgcggccttgatgattgatgaggcg
cacgaacggacggtgccaacagatattgcttgtggtctgcttaaggatattgccaaggca
cgacctgatctgaagctgctcatttcttcggcgacaatggacgcgcagaagttccaggag
tatttcgacaatgcgcccattttcaatattcctggtcgccgataccccgtcgacgtgcat
tatacttcacagcccgaagccaactaccttgccgcagccatcacaacggtattccagatc
cacgtctcgcaaggcccaggagatatcttggtcttcttgactggacaagaagaaatcgag
gccgctgagcaaagtttacaggaaacagctcgaaaacttgggagtaagattccggaaatg
ataattgctcctatctacgccaacctgccgtccgaactacagactaagattttcgagcct
actccgcctaaggcgcgaaaagtggtgcttgccactaatatcgctgaaactagtttgact
atcgatggtattgtctacgtgattgatcccggattcgttaaggagaacgtattcaaccca
cgcagcggaatggagagcttggtcgtgacaccgtgttcacgtgcctcggcgaaccaacga
gccggccgtgccggacgtgttgggccgggcaagtgtttccgcctgtacaccaagtgggcg
tactacaacgagctggaagagaataccacccccgagattcaacgtaccaacttgaacgga
gtgattctgatgctgaagtcactgggcattgaccaattgctcgacttcgacttcatggac
ccaccgccggcggagaccatcattcgtgctctggagcagctgtatgcgctcggagcactc
aatgaccgaggcgagctgaccaaggtcggccggcagatggctgagttcccaacagacccg
atgctcgctaaggcgatccttgctgccgacaaatacggctgcgtagaagaagtcctgtcg
atcgtgtcgatgctcggtgaaggtagcgcactcttcttccgacccaaggacaagaagatc
cacgcggacagtgcgcgtaaccggttcaccatcaaagacggcggtgaccacctgacgcta
ctgaacgtctggaaccaatgggtcgactcggacttcagcacgatctgggcgaaggagaac
ttcctgcagcagcgcagtctgacgcgagcgcgcgatgtgcgcgaccagctcgccaaactg
tgcgaccgtgtcgaggtcgctgtcagtacctgtggatctacgaatattcagccaatccag
aaggccatcacggctgggttcttccccaatgcggcacgactccagcgcggcggtgacagt
taccgcacaataaagaatgggcagtccgtgtacttgcatccgtctagtacgctgatggag
attaatccgcgctgggtcatctactttgagttggtcttaaccagcaaggagtatatgcgt
agtaatatgccgttgcagccagagtggctggttgaggttgcgccgcattactataagaag
aaggacttggagagtctggggctggatcgcaagatgacgaaggggcagggggtggctggg
gagaagagtcgggagtag
DBGET
integrated database retrieval system
