KEGG   Penicillium digitatum: PDIP_21810
Entry
PDIP_21810        CDS       T04849                                 
Name
(RefSeq) Nuclear pore complex subunit (SEC13), putative
  KO
K14004  protein transport protein SEC13
Organism
pdp  Penicillium digitatum
Pathway
pdp03013  Nucleocytoplasmic transport
pdp04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pdp00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    PDIP_21810
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    PDIP_21810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pdp03019]
    PDIP_21810
   04131 Membrane trafficking [BR:pdp04131]
    PDIP_21810
Messenger RNA biogenesis [BR:pdp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     PDIP_21810
Membrane trafficking [BR:pdp04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    PDIP_21810
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    PDIP_21810
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    PDIP_21810
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40 WD40_Prp19 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_EIPR1 WDR55 Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 EIF3I Beta-prop_Vps41 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR35_TULP_N Beta-prop_WDR75_2nd Beta-prop_SCAP NBCH_WD40 Beta-prop_NOL10_N
Other DBs
NCBI-GeneID: 26230503
NCBI-ProteinID: XP_014536954
UniProt: K9GFQ2 A0A7T6XPP0
LinkDB
Position
Unknown
AA seq 309 aa
MATPQVISNSGHEEMIHDAGLDYYGRRLATCSSDKTIKIFEIEGESHRLVETLKGHEGAV
WCVAWAHPKFGTILASSSYDGKVLIWREQPQNATSPSGGSTWTKVFDFSLHTASVNMVSW
APHESGCVLACASSDGHVSVLEFRDNNWTHQTFHAHGMGVNAISWAPAAFAGSLISSNPG
PGQQRRFVTGGSDNLVKIWEYNAESKSYNLTQTLEGHSDWVRDVAWSQSILSKSYIASAA
QDKTVRIWTSDASNPGQWSSQTLEFDTVLWRVSWSLSGNILAVSGGDNKVSLWKENLKGE
WEKVKDIEE
NT seq 930 nt   +upstreamnt  +downstreamnt
atggcgacccctcaggtgatctcgaattccggtcacgaagagatgattcacgatgctggc
ttggactactacggccgccggttggccacatgttcgtccgacaaaacgataaagatcttt
gagattgagggagaatcacaccgactagtggagacgctgaagggccacgagggtgctgtg
tggtgtgtcgcatgggcccatccaaagtttggcacaattctggcctcatcttcctacgat
ggaaaggttctgatttggcgggaacagccccagaatgcgacctcaccctccgggggtagc
acatggactaaggtcttcgatttctcccttcacacggcctccgtgaacatggtctcctgg
gctccccacgagagcgggtgtgttcttgcctgcgcttcttccgacggccatgtcagcgtg
ctcgagttccgggacaacaactggacccaccagaccttccatgcccacggaatgggtgtt
aacgctatcagctgggcccccgcagcctttgctggtagcctgatcagctctaaccccgga
cccggccaacaacgccggtttgttaccggtggcagtgacaacctggttaagatctgggag
tacaacgcggagtccaaatcgtacaacctcacccagactcttgagggacactcagactgg
gtccgtgacgtggcctggtcccagagcatcctctccaagtcctacatcgcctccgccgcg
caagacaagactgttcgcatctggacatccgatgcctccaacccgggtcagtggtccagc
caaacgttggagttcgacactgtcctatggcgcgttagctggagtctcagcggcaacatc
cttgccgtcagcggtggtgataataaggtcagtttgtggaaggagaacctcaaaggggag
tgggagaaagtcaaggatatcgaggagtag

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