Penicillium digitatum: PDIP_34660
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Entry
PDIP_34660 CDS
T04849
Name
(RefSeq) MRNA cleavage factor complex component Pcf11, putative
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pdp
Penicillium digitatum
Pathway
pdp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PDIP_34660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdp03021
]
PDIP_34660
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_34660
Transcription machinery [BR:
pdp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PDIP_34660
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
PDIP_34660
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
Pfc11_Clp1_ID
CID
zf_PCFS4
DUF7340
Zn_ribbon_ISL3
VHS
UBZ_FAAP20
Motif
Other DBs
NCBI-GeneID:
26231784
NCBI-ProteinID:
XP_014535298
UniProt:
K9G5I6
A0A7T7BK35
LinkDB
All DBs
Position
Unknown
AA seq
623 aa
AA seq
DB search
MSGLVSDEIAEDYKSSLEDLTTNDGIQIRTLTVIAKENTEHAMAISRVLENHIRSTPPLQ
KLPALYVADSIVKNVGSPYTLFLGRNMYQTFMNVYTLVDGNTRRKLDEMLNTWKQPAPGS
LDTRPVFPPDITRNIESALIKARTAALQQQQARAQPDILGRSRGNGTPTGWINSAIPPQN
MPRPSQNQYHNNGHSNSTPPQTYRHDVDLSYLNRDVDALIASAKIDFANSPFNPVSQQRL
KALVDLQAILQKQQLAPDQLKLVRDQVSALAATRPQSVAPNTATNGSAVSAPPQIPTPPA
LSVSLPLQQLLNQNTLAELIKATASRQQSTPPPQIPATLSQMPQYPHQSGPPQLAPENPL
IAALRARGLLPGGSTPSSLTHSTSTPATGRSNLPFILPHGMQPTTPAPSQTPISSNGSSV
PMNTASMKIPRFGLIVSLYDSRPNRCGTCGRRFMTTEEGKEMKARHLDWHFKTNQRMTES
SRRAQNRSWYVDERDWIKSREAGDENGTVDPQATNEGASGVDGSSKQEPPKPWIRAPNDA
TLRNTPCPICQEKFESTWSEDVQDWIWQDAIKIGSRVYHASCYSEVTKGPRQTRTSTPDS
VLGKRKVEGTESPSQKTRIKTEI
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcctcgtttccgatgaaattgcggaggactacaagagttccttggaggatcta
acaaccaacgatggaatccagatccgcaccttgactgtcatcgccaaagagaataccgaa
cacgcaatggctatctcccgggttctggagaaccacattcgatcaacaccaccactgcag
aagcttccagccctctatgtagccgattccattgtcaagaacgttggaagcccctacacc
ctcttccttggccgcaacatgtaccagaccttcatgaatgtttatactctggttgatggg
aatacccgaaggaagttggatgagatgctcaacacatggaagcagccggccccaggctcc
ctggacacgcgcccagtcttccctcccgacatcacacgcaacatcgagagcgctctcatc
aaagcacgtactgcggctttgcaacaacaacaggccagggcccaaccggacatcctcggt
cgtagtcgtggaaatgggactccgactgggtggatcaacagcgctataccaccccagaat
atgcctcggccttcacaaaatcagtatcacaataatggtcattctaattcgacacctccc
cagacttatcgacatgatgtcgatttgagctacctcaatcgagacgtggatgccctgatc
gcttctgcaaagattgactttgctaatagtccgtttaaccccgtctctcaacaacgcttg
aaagcgttggtggatcttcaggccattctacagaaacaacagctcgccccagatcagttg
aaacttgtccgagatcaggtttctgcgcttgctgctacaagaccgcagtcggttgctcct
aataccgctacgaacggttcggcagtatctgctcctccacaaatccccacacctccagcg
ctgtcagtctcgctgcccctccagcaactattaaaccagaacactctcgccgagctgatc
aaagctaccgcttcacgtcagcagtccaccccgccacctcaaatcccagcaacgctgtct
cagatgccccaatatcctcaccaaagcggccctccccagctagcgccggagaaccctctt
attgcggccttgagggcacgtggacttctacctggtggatcgacaccctcgtctcttacg
cattcgacttcgacaccagctactgggaggtccaatttaccgttcatcttgccccatgga
atgcaacctaccaccccagccccgtcccaaactccaatttcctccaatggatcctctgtc
cccatgaacaccgcatctatgaagatccctcgattcggactcatcgtctctctttatgat
tcccgaccgaaccgatgcggaacttgcggccgtcgcttcatgacaacggaggaaggcaag
gaaatgaaggcccggcatctagactggcatttcaagactaaccagcgcatgactgagtcc
tcccggcgggctcagaatcgcagttggtatgttgatgaaagggactggatcaaatctcgg
gaagctggcgacgaaaacggtacagtggatccccaagccacgaatgaaggagcttcaggc
gtggatggcagtagtaagcaagaacccccaaagccgtggattcgagctccgaacgatgcc
accctccgcaacaccccatgccccatctgtcaggagaaattcgaatcaacctggtctgag
gatgtccaggactggatctggcaagacgcaatcaagatcggaagtcgtgtgtatcatgcc
agctgctattccgaagtgaccaagggcccgcgccagacacggaccagtacaccggactct
gtactgggcaagcggaaagttgaaggaactgaatctccaagccagaagacgcgcatcaag
accgagatctga
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