Penicillium digitatum: PDIP_48340
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Entry
PDIP_48340 CDS
T04849
Name
(RefSeq) Eukaryotic translation initiation factor eIF-4A subunit, putative
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pdp
Penicillium digitatum
Pathway
pdp03013
Nucleocytoplasmic transport
pdp03015
mRNA surveillance pathway
pdp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PDIP_48340
09122 Translation
03013 Nucleocytoplasmic transport
PDIP_48340
03015 mRNA surveillance pathway
PDIP_48340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_48340
03041 Spliceosome [BR:
pdp03041
]
PDIP_48340
03009 Ribosome biogenesis [BR:
pdp03009
]
PDIP_48340
03012 Translation factors [BR:
pdp03012
]
PDIP_48340
Enzymes [BR:
pdp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PDIP_48340
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PDIP_48340
mRNA cycle factors
Stress granule specific factors
PDIP_48340
Spliceosome [BR:
pdp03041
]
Complex C
Other components
EJC/TREX
PDIP_48340
Ribosome biogenesis [BR:
pdp03009
]
Eukaryotic type
90S particles
Helicases
PDIP_48340
Translation factors [BR:
pdp03012
]
Eukaryotic type
Initiation factors
eIF-4
PDIP_48340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
AAA_30
COG4_N
TniB
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
26233151
NCBI-ProteinID:
XP_014533828
LinkDB
All DBs
Position
Unknown
AA seq
399 aa
AA seq
DB search
MADGIDRRAEERMEFSTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQIC
KGRDTIAQAQSGTGKTATFAISTLQIIDTVVRETQALVLSPTRELATQIQSVVMALGDYM
NVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVADMIRRRNLRTRHIKMLVLDEADELL
NRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQ
YFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQ
KERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGR
KGVAINFVTSDDVRILRDIELYYSTQIDEMPMNVADLLS
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggaatcgacagacgcgccgaggagcgcatggagttcagcacctccaaggag
gtgacggtcgcgccgactttcgaggatatgcacttaaaggagagcctgcttcgcggaatt
tacgcctacggatacgagtctccttcagctgtgcaatcccgtgcgattgttcaaatctgc
aaaggtcgcgacactattgcccaggctcagtccggtactggtaaaactgctacattcgcg
atcagtaccttgcagatcattgatactgttgtgcgcgagacccaagctctcgttctgtcc
ccgactcgcgaactcgcaacccaaattcaatccgtcgttatggcccttggcgattatatg
aacgtccagtgccacgcttgtattggaggaaccaacgttggcgaagatatccgcaaactt
gactacggccaacacgttgtctcgggaactcctggtcgtgtggcggatatgatccgtcgc
cgaaacctgcgcacacgtcacatcaagatgctcgttctcgatgaggccgatgagctcctt
aaccgcggtttccgcgagcagatttacgatgtttaccgttacctgccccccgcgacgcag
gtcgtcgtggtctctgccactctcccatacgacgtcctggacatgaccacaaagttcatg
actgaccccgtccgtgttctggtcaagcgtgacgagttgacattggaaggtatcaagcaa
tacttcattgccgttgagaaggaggaatggaaattcgacacactttgcgatctgtatgac
accttgaccatcacccaggccgttatcttctgcaacacccgccgaaaggtcgactggctt
accgacaagatgcgtgaggccaacttcaccgtctctagtatgcacggcgagatgcctcag
aaggagcgtgatagtattatgcaagacttccgtcagggaaattctcgtgtcctcatttct
accgatgtctgggcccgtggtatcgatgtccagcaagtctccctggtcatcaactacgac
ttgcctaccaaccgtgaaaactacattcaccgtattggtcgatctggacggttcggccgc
aagggtgtggccatcaactttgtcaccagcgatgatgtccgcatccttcgcgacatcgag
ttgtactattcgacccaaattgatgagatgcccatgaacgttgcggatttgctttcataa
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