Penicillium digitatum: PDIP_50380
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Entry
PDIP_50380 CDS
T04849
Name
(RefSeq) DEAD box helicase involved in nonsense mediated decay, putative
KO
K11701
helicase required for RNAi-mediated heterochromatin assembly 1 [EC:
5.6.2.5
]
Organism
pdp
Penicillium digitatum
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pdp03036
]
PDIP_50380
Enzymes [BR:
pdp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
PDIP_50380
Chromosome and associated proteins [BR:
pdp03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
PDIP_50380
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_19
AAA_12
AAA_30
ResIII
DEAD
PhoH
UvrD-helicase
nSTAND3
AAA_22
AAA_23
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
26233355
NCBI-ProteinID:
XP_014534032
UniProt:
K9FVA7
LinkDB
All DBs
Position
Unknown
AA seq
512 aa
AA seq
DB search
MDFTTLSETSVLDITKKYDILKQWPSQPMGKLDASQWSALNRMLTKRLAIIQGPPGTGKT
FTSIAALRMMLSNKAPTDPPIIIAAQTNHALDQLIKHISVFEKNYVRLGGRTSDPEIRKR
TPYEIRQNDGLLKIEGGLMTPMRKKQNKIAAELDKLLKPLARSNNSRPLEASLFLENGLL
SQDQVDSLQETAHIWQQSNTPANTDPLAAWLAGSVREFQSEYAGDFGFIDDDSDLEYEQL
KEIEVEHGGHEDDWSSFRTRFFPLSPGLCSSNTARISRATVESLLKENDFYKIHKRYRGA
VYEYLRQQLIAILEEHVQRLAQTYQDCSANFQIGRFERDFCILQEAKIIGMTTTGLSKYR
GLVSSLKPRVILIEEAAEILEAPFAVACLPSLQHLILVGDHQQLKGQCADYELCGNPFNL
DVSMFERLMTNEMPYTMLQEQRRMVPEIRKLVAPMYGDILRDHPSVEDHPLVPGMGDKRF
FFFDHTAHESNDNLLSKVNDFEASMVVNLLTL
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggacttcacaacattgtctgaaacctctgtgctcgatatcaccaaaaagtatgacatc
ctcaaacaatggccctcgcagccaatgggaaagctagatgcatcccaatggtcagccctg
aatcgtatgttgactaaaagactggccatcattcagggccctcctggaacaggtaagacc
tttacctccattgctgctctgcggatgatgctctcaaataaagcgcctacggatccgccg
attataattgccgctcaaactaaccatgctctcgatcaactgatcaagcatatctcggtg
tttgagaaaaactatgtgcgactaggtggaagaacctctgatcctgaaatccgtaagcgc
accccctatgagatcaggcaaaatgatggtctgttgaaaattgaggggggcttgatgact
ccaatgagaaagaaacagaacaaaatcgcggctgagcttgacaagctcctaaaaccactt
gcgcgatcaaacaacagcaggcctcttgaagcatctctatttttggaaaatggtcttttg
agccaagaccaggttgattccttgcaggaaactgcacatatatggcagcaatctaacacc
cccgcaaataccgatcctttggcggcttggcttgcaggcagcgtgagggaatttcaatcc
gaatacgccggtgacttcgggttcattgatgatgatagcgacctggaatatgagcaactg
aaggaaattgaagtcgaacatggaggacatgaagatgattggtcatctttcagaacacgg
tttttcccattgtcgcctggtctttgtagctccaacactgccagaatctcccgggccacg
gtcgaaagtcttttaaaagagaatgacttttataagattcacaagagatatcgcggtgcc
gtttatgaatacctgcgtcagcagctgatcgcgattctggaagaacatgtgcagcgcctt
gctcaaacttaccaagactgctctgccaattttcaaattggtaggtttgaacgagatttc
tgtattctacaggaggcgaagataattggcatgaccaccacgggtctgagcaaatataga
ggattggtctcgagtttgaaaccccgggtcatcttgattgaggaggcagcagaaatactt
gaagccccatttgcagttgcttgccttccatcacttcagcatcttattcttgttggtgat
caccagcagctcaagggtcaatgtgccgactatgagctctgcggcaatcctttcaacctc
gatgtctccatgtttgaacgtctaatgacaaatgaaatgccgtacaccatgcttcaagag
caaagacgaatggtgccagaaatcagaaagctcgtagcacctatgtatggggatattctt
cgtgaccatccgtctgttgaggatcaccctttggttcctggcatgggagacaaacgtttt
tttttcttcgatcacacagcgcatgaaagtaacgacaatctattgtccaaggtcaacgat
tttgaggcatcgatggtggtcaatctccttaccttgtga
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