Penicillium digitatum: PDIP_50770
Help
Entry
PDIP_50770 CDS
T04849
Name
(RefSeq) THO complex component (Rlr1), putative
KO
K12879
THO complex subunit 2
Organism
pdp
Penicillium digitatum
Pathway
pdp03013
Nucleocytoplasmic transport
pdp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PDIP_50770
09122 Translation
03013 Nucleocytoplasmic transport
PDIP_50770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_50770
03041 Spliceosome [BR:
pdp03041
]
PDIP_50770
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
PDIP_50770
Spliceosome [BR:
pdp03041
]
Complex C
Other components
EJC/TREX
PDIP_50770
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PDIP_50770
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
Motif
Other DBs
NCBI-GeneID:
26233394
NCBI-ProteinID:
XP_014534071
UniProt:
K9FWL3
A0A7T6XLK7
LinkDB
All DBs
Position
Unknown
AA seq
2347 aa
AA seq
DB search
MAPGYGHGGKRKRIDRSWSGESGSNDLRPSPHRPGTLNIAYHPTNPGHQSPTPREQNDTR
DRSRRQSHRSRAGSRRGSHDGQNFSNSQHREPNAMSPPAITQPREAVELAPYNGDSTTSR
PTPSPAPNTLASQPQPNPPSRAGSETITRQPSLPPLPYDYEYVTDDAVEEWTSAGKQNVV
EEGTVARLQQDLARLASVYQELIRSAIYGRLSPLNAGIAVKEIIGEESVSQDVDMDSDSG
KSSTQSVDPRSLFLDTLSIVTDADTSNVALKPLVFATGIDPSLMRLQLDTPLLQALGLVR
ETFARMGIRKQTNLLYRQSNYNLLREESEGYSKLVTELFTTSNNEPPSSEVVEDTFERVK
AMIGAFDMDVGRVLDVTLDVFAAVLVKQYRFFVKLLRVSSWWPKEDILCTLEQSRRHSGI
PNWALPGSTGWITTDEERSTTMRANEERDSQFWDRVREIGLQAFFEIGRKPVSEEEKQRS
LSENNGLSFEEDATRSWLEETGTLPPKGNRVAAQLLGFKLRFYSSSVRTKADVLPDNLIY
LAALLIKVGFISLRDLYAHLWRSDDTMEILKTEKMTEKAERVKAGRPGGGTNALMMAGAL
SDDTIPPSRLRDEPRVATPGKDQESDKGTPKTENELPDPSDQKVLLLKSLLAIGAIPESL
FVISKFPWLMEAYPELPEFIHRILHHSMNKVYIQFRPLSSTNDFPGAQCMVTSDQNSARG
QIGLTPPPARRVLRWAQLDKEDTNDGTDYRFYWDDWADNIPICQSVDDVFALCSSFLNLS
GHKIGQDASLLAKLVRIGKGSMIQDGSEENRIRWRDLCKRLLLPAVSLTKANPGVVNEVF
DLISFFPRDVRYNMYAEWYSGQTSRLPDIKEAFDQARAETKDTLKRLSKTNIRPMARALA
KIAYANPGIVINVAMSQIESYENLIEVVVECARYFTYLAYDILSWSLINSLGQKGRSRVQ
EGGLLTSRWLNALSTFAGRTYKRYSVMDPTPVLQYVVEQLRHNNSTDLIVLEQLISSMAG
IISDNDFNDAQIQAMAGGDVLQSQTILQLLDKRHESKTTSKRLLKSLTHTRLAGQLLVAI
AQERLTCVYKETSSELKLLGNIFDEIHRILTQYLDLLRSNLSVDDFDSFVPDFRSLVMDF
GIQPEIAFWIRRPSIARKITDIEESKQEMERSASVSKSNGENKMDTTEDEEASPKSEEIP
ADSAMDVDKDETGMPVPIEGPDASLVPAVNAGPLAANRVMQELIDDVKTALPAETWETIG
AHFYATFWQLSLYDVHIPQKSYEDEIDRLKRRVVSIKSDRSDLSMAGTARKEHLKRQLTQ
LQERILDENKNHLKAYGQTRSRLQKEKDKWFAGMRLKHDSLNVALLEQCFIPRLLLSPLD
AFFSFKMLKFLHNSGTPNFRTVGLLDQLFREQRLTALIFLCTSKEADNLGRFLNEILRDL
TRWHADKAVYEKEAFGAKRDLPGFAKNVDPEGVPVMFLEFEDFRRLLYKWHRLFSNALKS
CLGSGEYMHIRNAISVLKAVVNHFPAVNWIGRDILNCVDHLSKNDERDDVKIPAASLIGD
LNRREKKWMLPQAFYFVAAQPGSQVSADAAGKPGTPQSATTSLNASAPEFNPAGSSVSDG
IAKQEQPSKAEVEDGEIEDAKMTDVGRGKDGEVKLIRTPSQAGSTTPSVVTGDTIQDAAS
GEQPPVRSRPHSRAPTSSRQPDIPKRPDIRQQVHPPVRPPPRHSDGRLPPRPEGLDDRRE
RHPDFGPRGRHGGPDHNRSFDGSLGDVRGRLNEHLNERDREFPMRPLADDLMRGQPRDSR
VARENGWPMDRPGRMRGPGPSDSFHGRDPSVRGELMPDHMDRPVDIPRRGDQSRPEKDDR
RPYPPRPLSPPRPADLPNRPERFPPPDDRRPTGFPPSSRIDDLPRGPRTDRQADPRDTAP
GPDMTHGRLRQLEPPSEIPAGPRRRGGRNIPGQAPPMLSSSNATLPAPERQAPTGPARQN
ERRAPEQPSPPTQPAGSTSAPGVHPDRLRNLVNEPAAPAAAPSGPRGLGPQQPPRGPSAQ
SAQSGPPTQGFGGERGRGDKRFAGLNNMLQQSGGGGGDRGGNTPPVRGRGANRPPSNMEA
PSPQPAHRPPMGPAGPQEDLFRNRPTSGRGGDLIDDIVPEGGRSGPTGNRRETEPTREKE
PERRDGSSSGRNRRDGRRNDRERSRRSDAGAGGSRDEKGTGEPRETLRRVQSSREELRRR
DRRDRPDGPSEMAGPTPSNSETQEGEGRLRPSSAMEAPPPPPPPPPPMPEGNERRFNSGD
RGSRSDNRDRERERRGDRRDRDHQREGGSGSGGSGHRKRGRQGPDDGTDGGRGMRMGNDN
KRPRRGA
NT seq
7044 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctgggtatgggcatggtggcaagcggaaacgcattgatcgctcgtggtccggc
gagtcagggagtaatgacctgcggccttcaccccatcgccctgggaccctcaacatagca
tatcaccctaccaaccccggacaccaatcccccactccccgagagcaaaatgacacgcgt
gacagatctcggcgacaatcgcatcgcagccgggctggttcccggcgcggatcccatgat
ggtcagaatttttcgaattcgcagcatcgagagccgaacgctatgtctcctcccgcaata
actcagcccagggaagctgtcgaactcgcaccgtacaatggcgactcaaccacgtcgcga
cctaccccttctcccgcgccaaatacccttgcttcacagcctcaacctaacccgccgtct
cgagctggctcagagactatcactcgccagccctctctcccacctctaccttatgactac
gaatatgtgactgacgacgctgttgaggaatggacttcagcgggcaagcaaaatgtagtc
gaagaagggaccgtggctcgcctgcaacaggacctggctaggcttgcatctgtataccag
gaacttattcgctccgcgatctacggtcgactttcacctttgaatgcgggtattgctgtc
aaagaaatcatcggcgaagaatctgtgtcccaggatgtggatatggatagcgacagtgga
aagtcctcgacccaaagcgtcgacccgcgctctttgttcctcgatacgctttctatcgtg
actgacgccgatacctcgaacgtggctcttaaaccacttgttttcgcgacaggtattgat
ccatctttgatgcgccttcagcttgacaccccgttgttgcaagccctgggcttggttcgt
gaaacctttgcgcgaatgggaattcgtaagcagaccaatctgctctaccgacagtccaac
tacaatcttctccgggaagaatccgagggatactcaaaactcgtcaccgagcttttcacc
acgagcaacaacgagccgccgtcgagcgaagtggttgaggatacatttgaaagagtcaag
gctatgattggtgcatttgacatggatgtcggccgtgtgctagacgtcacgctagatgtg
tttgctgcggtccttgttaagcaataccgtttcttcgtaaagcttctgcgagttagttcc
tggtggccgaaggaagacatcctctgcaccctagagcaaagccgtcgccactccggaatt
ccgaattgggcactccctggatcaactgggtggatcacaaccgacgaggagcgatccact
actatgcgcgcgaatgaggagcgcgatagccaattctgggatcgagtaagggaaatcgga
cttcaagccttcttcgagatcggccgcaaacccgtctcagaggaagaaaagcaacgaagt
ctttcggaaaacaatggtttgtcatttgaagaagatgctacacgatcatggcttgaagag
accggcactctacccccgaagggcaaccgggttgcagcacagctgcttggtttcaagtta
cgattctattcttcttcagttcgaaccaaagccgatgttctccctgataatctcatatac
cttgccgccctgctcatcaaagtgggcttcatctccctgcgcgacctttatgctcaccta
tggcgatctgacgacaccatggagattttaaagaccgaaaagatgacagagaaagctgaa
agagtgaaggctggccgaccaggtggcggaactaacgctttgatgatggccggcgctttg
tcggacgacacaattcctccttcccgcctgcgcgatgagccgcgagtggcgactcctggg
aaagaccaagaatccgacaaaggcacacctaaaacagaaaacgagttgccggacccatca
gaccagaaagtgctgctcctcaagagtcttctcgctattggcgccattcccgaatctctt
ttcgtcatcagcaagttcccctggttgatggaagcttaccctgagctgcctgagttcatt
caccgcatactccatcactctatgaacaaggtctacattcagttccgaccattgtcatct
accaatgacttccccggagcccaatgcatggtgacctccgatcagaacagtgcgaggggt
cagattggacttacgcccccacctgcgagacgagttctgcgatgggctcagcttgataaa
gaagacactaacgatggcaccgactatcgattctactgggatgactgggctgataacatc
ccaatttgtcagtctgtcgacgacgtttttgctctttgctcatctttcctaaacctctct
ggtcacaaaattgggcaagatgcgagcctattggcgaagcttgtacgaattggcaaagga
agcatgatccaagacggatccgaggagaacagaatacgctggcgggatctttgcaagcgt
cttctcctacccgctgtcagcctaacaaaagcaaaccctggtgttgtcaatgaagttttt
gatctcatcagcttcttccctcgagatgtgcgatacaacatgtacgcagagtggtattca
ggacagacgtcccgtctgccagacatcaaggaggcctttgatcaggcgagggcggagacc
aaggacaccctcaagcgactcagcaagacaaacatccgacccatggcccgcgctttggcc
aagattgcttacgccaatcccggaattgtcatcaatgtcgccatgagccaaattgagtcg
tatgaaaacctcatcgaagttgtggttgaatgtgcacgctactttacttaccttgcttac
gacatcctatcctggtctctcatcaattcccttggccagaaaggacgaagtcgagtccag
gaaggtggactgttgaccagtcgatggttgaacgccctctccacattcgccggccgaact
tacaaacggtactcggtgatggaccctactcctgtcctccagtacgtggtggagcaactg
cggcacaacaattcgaccgatctcattgtgctagagcaattgataagctcaatggccggc
atcatctccgacaatgacttcaatgacgcccaaatccaggccatggccggcggtgatgtt
cttcaatcccagaccatcctgcaactactggacaagcgtcatgagtcaaagacaacatcc
aaacggttgctcaagtcgttaacccacaccagactcgccggtcagctcttggtggctatc
gcccaagaaagattgacttgtgtttacaaggaaacttcctcggagctcaaattgctcggc
aacatctttgatgagatccacagaattctcacccagtacctcgacttgcttcgcagcaat
ctctcggtcgatgatttcgattcctttgttccggactttcgatcactcgtcatggatttt
ggcattcagcccgaaatcgccttctggattcggcggcccagcattgctcggaaaatcact
gatattgaagagtcaaaacaagagatggaacgttcagcctctgtctcgaagtcgaacggc
gaaaacaagatggacactactgaggacgaagaagcatctccgaagtccgaggagattcca
gctgacagtgccatggatgttgataaagatgaaacaggaatgccggttccaatcgaggga
cccgatgccagccttgttcctgcggtcaatgctgggccattggccgccaaccgcgtcatg
caagagttaattgatgatgtcaaaaccgctcttcctgccgaaacatgggagactattggt
gcacatttctatgcaacattctggcagctgtccctttatgatgttcatatcccgcagaaa
tcttatgaggatgaaatcgacagactcaagcgccgagtcgtctctatcaaaagtgaccga
tctgatcttagcatggcgggcacagcacgaaaggagcacctgaagcgccagcttactcag
ttacaggagcgcattttagatgagaataagaatcatctgaaggcctatggccaaacacgc
tctcggctgcaaaaagagaaagacaagtggttcgccggcatgcgcctcaagcatgactct
ctcaacgttgccctgttggagcaatgtttcattcctaggcttcttttgtcccctctcgat
gcatttttctccttcaagatgttgaagttcctgcacaactctgggacccctaatttccgg
accgttggtctccttgatcagcttttccgtgagcagagactcactgctctcatattcttg
tgcacatctaaagaagcggacaatcttggtcgttttttgaatgagatcttgcgtgatctt
actagatggcatgccgacaaagcagtttacgagaaagaggcgttcggtgccaagagagat
ctccctggcttcgcgaaaaacgtcgatcccgaaggcgtgccggtgatgtttttggaattt
gaagacttccggcgtctattgtacaaatggcaccgcttattttctaacgcgctgaagagc
tgtctcggcagtggcgaatatatgcacattcgaaacgcaatcagtgtgctcaaggctgtt
gtaaatcatttccctgctgtgaactggatcggtcgcgacatcttaaactgcgttgaccac
ctaagcaagaacgacgagcgagacgatgtgaaaattcctgccgcgtctttgatcggtgac
cttaaccggcgcgagaagaagtggatgctgccgcaggctttctattttgtggcagctcag
cctggttctcaggtctctgccgacgcagctggaaagcccgggacccctcaatctgctaca
acttccttgaatgcctcagccccagagttcaaccccgctggatcctcagtctccgatggt
attgccaagcaggaacagcctagcaaagctgaagttgaggatggtgaaattgaagatgcg
aaaatgaccgatgtcggtagagggaaggatggtgaggttaagctgatcagaacaccctct
caggctggatctaccacgccttccgtggtcactggggataccatccaagacgctgcatct
ggtgaacaaccccctgtgcgatctcggccacattctcgtgcccccacttcgtcccgccag
cctgatattcccaaaagacctgatattcgccaacaagtccatcctcctgttcgtccccca
ccgcgccacagcgatggaagactgcctccgcgccccgagggattggatgatcgacgagaa
aggcatcctgattttggaccccgcggccgtcacggtggtcctgatcataaccgctccttt
gatggttctctgggcgatgttcgaggacgtcttaatgagcatctcaacgaacgtgatcgc
gaattccctatgagacctctagctgatgatctcatgcgtggacaacctcgtgattctcgt
gttgctcgcgagaatggttggcccatggataggcctggccgcatgcgcggaccagggccc
agtgattcgttccatggacgtgatccctctgtgcggggagagctgatgcctgaccacatg
gaccgcccagttgatattcctcgacgtggagatcagtccagaccagagaaagatgatcgg
aggccctacccgccacgccctctatcgccgcccagacctgccgacctgccgaaccgtccc
gaacgattccctccacccgatgatcgccgacctaccgggtttcctccgtcctcccgtatt
gatgatctccccaggggccctcgtactgatcgacaagctgatccgagggacactgcacca
ggccctgatatgactcatggtcgacttcggcagctggaacctccatctgagattcctgct
gggcctcgaagacgcggtggacgtaacattcctggacaagcccctccaatgctcagttca
agcaatgctaccttacccgctccggaacgccaggcacccacgggccctgctcgacaaaat
gagcgtagagcacccgagcaaccttctcctccaacacagcccgcgggttcgaccagtgcc
ccgggcgttcacccagatcgtctcaggaatcttgtcaatgagcctgcagcccccgctgct
gctccttcaggccctcgtggactaggtccacaacaaccccctcgaggaccctcggcacag
tctgcgcagtctggaccgcctacacaaggctttggtggggagcgtggccgcggtgataaa
cgcttcgccggcctcaataatatgcttcaacaatctggtggtggcggtggtgaccggggt
gggaacactccgcctgttcgcggaagaggcgccaatcgaccaccgagcaacatggaggca
ccatcgcctcagcctgcacaccgtccacccatgggacctgcaggacctcaagaagattta
ttccgcaatcgacccaccagtggccgaggtggcgacctgatcgatgatatcgttcccgaa
gggggtcggtctggaccaactggcaatcgccgtgaaacggaacctactcgcgagaaagag
cctgagcgccgtgatggcagtagcagtggtcgcaatcgacgcgatggccgtcgaaatgac
cgcgaacgcagccgtcgaagcgatgcaggtgctggtggaagccgcgacgaaaaaggcact
ggcgagccccgtgagaccctgcgccgggttcagagctcacgcgaagagctgcgacgtcga
gaccgacgtgaccgcccagatggaccgtcggaaatggctggaccaacacctagtaacagt
gagacccaagagggtgaaggtcgtttgcgaccctcatccgccatggaggcacccccaccc
cctccgcctccgcctccccccatgccggaaggaaacgagcgtcggttcaattctggcgac
cggggtagccggtccgacaatcgggatcgcgagcgcgagcgccggggcgatcgacgtgac
cgagatcaccagcgtgagggtggcagcggctctggaggctctgggcaccgtaagcgcggt
cgacagggccctgatgatggcactgacggtggacgcggcatgagaatgggaaatgataac
aagcgtcctcgtcgaggagcatga
DBGET
integrated database retrieval system
