Penicillium digitatum: PDIP_52990
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Entry
PDIP_52990 CDS
T04849
Name
(RefSeq) CCR4-NOT core complex subunit Caf1, putative
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
pdp
Penicillium digitatum
Pathway
pdp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDIP_52990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_52990
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PDIP_52990
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PDIP_52990
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
26233616
NCBI-ProteinID:
XP_014534293
UniProt:
K9FUE4
A0A7T6XL42
LinkDB
All DBs
Position
Unknown
AA seq
477 aa
AA seq
DB search
MPPPVGRYGPSGLNPPYNIQQAHLQSQHPAHAQSGNTLPPPSLGHPGFAGNPNTNINPFT
LSSGISNGMAVGGFPGAGSGDGGGTGLASHAAQMGFARGAQMQQQQLHQGHDGRLSLEAK
GGAVKSRIRDVWKHNLAHEMAVLRQLVDKYPYISMDTEFPGIVARPIGAFSNKADYHYQT
LRCNVDLLKMIQLGITLFNDEGEVPPASGTDANGQAYGVPAPCTWQFNFRFSLEGDMYAQ
ESTAMLAKSGIDFAMHEKNGIDPFEFGALLISSGLVLLDDVHWVSFHSGYDFGYLMKIML
CSQLPENEEEFHKLLTIFFPSLYDIKYLMKHAGRNQAVNGSPLTQAAAQILTNLGQKSGL
QDIADELGVKRVGIAHQAGSDSLVTGEIYWKTRQLIFGGAIDDSKYSGQIWGLNGQMPAV
AYSMAQQTPNLNGATIYSGGTPSTPNTGSQGTGAHTPQHHGAGYNAPTPGAYQMGRV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgccacctcccgttggcagatatgggccatctggcttaaaccctccatacaacatacaa
caagctcaccttcaatctcaacaccccgcacacgcacagtctggaaatacgctccctccc
ccttcgcttggtcatcctggattcgcgggcaatccgaacaccaacatcaatccctttaca
ctatctagcggaatttcaaatggcatggcggtaggcggttttccgggagctggctcaggt
gatggcggtggcaccggtctcgctagtcatgcggcacaaatgggatttgcgcgcggtgcg
caaatgcaacagcaacaactacaccagggtcacgacggccggttatcgctcgaagcaaag
ggaggtgcagtgaaatcaagaattagagatgtctggaagcacaacctggcccatgagatg
gcggtgctgaggcagctggtcgacaagtacccttacatcagcatggacaccgaattccct
ggcatagttgctcggccgatcggggcattttcaaacaaagccgattaccattatcagacc
cttcgatgcaatgtcgatcttctgaagatgatacaattaggcatcactctattcaatgac
gaaggagaggttcccccagcctcaggcaccgacgccaatgggcaagcgtatggtgtgccc
gctccctgcacatggcagttcaactttcgattttcgctcgagggagacatgtacgcccag
gagtcaacagccatgcttgccaaatctggaatcgactttgccatgcatgaaaagaacggt
attgatccattcgagttcggggctcttttgattagctctggattggtgctactagatgac
gtccactgggtttctttccactccgggtacgactttggctacttgatgaagatcatgctc
tgctcccagcttccagaaaacgaagaggagttccacaagcttctaaccatcttcttcccg
tcactttacgacatcaagtacctcatgaagcacgccggtcgcaatcaagccgtcaacggt
tctcctcttactcaggctgcagcacagatcctgaccaaccttggccagaaatctgggttg
caagacattgccgacgaactcggcgtcaaacgcgttggaatcgcccaccaggctggctcg
gactccctagtgaccggcgagatctactggaagacgcgccagctcattttcggaggggca
attgacgacagcaaatattctggtcaaatctggggcctcaacggacaaatgcccgcagtt
gcctacagcatggcccagcaaacgccaaacctcaatggtgctaccatttactcggggggt
acccccagcactcccaatactgggtctcagggaactggcgcccacacacctcagcaccac
ggagctggctacaatgccccgactcctggagcctatcaaatgggccgggtatga
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