Penicillium digitatum: PDIP_54560
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Entry
PDIP_54560 CDS
T04849
Name
(RefSeq) Nonsense-mediated mRNA decay factor (Upf2), putative
KO
K14327
regulator of nonsense transcripts 2
Organism
pdp
Penicillium digitatum
Pathway
pdp03013
Nucleocytoplasmic transport
pdp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PDIP_54560
03015 mRNA surveillance pathway
PDIP_54560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_54560
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
PDIP_54560
mRNA cycle factors
P-body specific factors
PDIP_54560
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
26233772
NCBI-ProteinID:
XP_014534449
LinkDB
All DBs
Position
Unknown
AA seq
1184 aa
AA seq
DB search
MDRQRELRDLNERAWAGESDVFPTSKSLDSALKKNTAFIKRLRTGISASALSTFLADIRT
LSLHKYLSEIISACYEGLCKLKTPGEIAAGVEVVSALHQRFGPWEFTRQIGWLLGRGLST
PDKAQLKALSQEIREREEKDRLSRHRVLLRVVTELWLVNVLKTLDDVERPEELGAKGKEG
AVGIGNKPSDAPLKAKTPVTGAKDQDKQADPFPLEVLKELLGHDRDHTNLPLAVLFVKSF
SWDIVGSKLAEDGRKPGEVDGATTISAADAQTTETNEDAHLETDLPLTPEKTQQRFRSIL
SRYLEDVKAHVVRDQRALAQQNRRNAEAYVKSGEIFEDRQANFEKQSKVLEKLVANTQVL
CEALGTDMPDLAEKEPTDASASGGIGLVKTTDYLRGQGEGAGIWEDEEERRFYENLVDLK
GKVPAVLLEDGKKKKSEAEESGKRKPDGETADSAEPSDEKSAADADDQSTAIASKTVGAQ
VDSLLAKLPELQTKDQVDQFALDFCWVNSKASRNRLVKAVSDIPKGRIDLLPLYSRLVAT
LGQYLPDIPQGLTTYLDEEFRSLQRRKSKEFLGQVRMSNVRYLAELTKFGVVPEHIIFHC
FKVSLDEFSRMNIEIIGHLLENCGRYLLRNPDSSPRMASFLETLSRKKTVQHLAQQERMV
IENAIYYVDPPPRPAIQQKERTPMEQYIRRLIYLDMNKRNYTKILKSIRKLHWEEQEVVE
ILERVFSKPVKVKYGSIHLLAILVSALYRYHQGFVIGIVDNVLEQVTLGLEQNDFKFNQK
RIAEIKYLGELYNYKMIDSPVIFDTLYRLITFGHEGGTPAPGKICMLDLPDDYFRLRLAC
TLLDTCGHCFDRGSAKKKLDFFLAFFQYYLFTKDPLPMDVDFLVQDTYHFIRPQWKIATD
GEEATRIFSEAVALNYNVQDSERPVEPDEEDADSSSSDEDLEEDAIPEIDEDQESSDEAE
VGPPSFLHEVRPINPFYPLKASGPNLEANDDSNSESEDEQIVVTRQEEERDPVTEAEFDR
EFEKMMAESMDSRRFERKTVFDIPLPMKRPRENMPSPEPIPAEPVAPKTMAFSLMTKKGN
KQQTRTIDLPSDSTFAIAMRSQQQADREEQQRIKNLVLNYEASTEPEPTESEQYPLAKRK
NFQLRYPKAATQEKRTPAGQRMDKAGANRSAFRSRKLQLSDVNW
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggatcgccaacgggagcttcgcgacctgaatgagcgagcttgggcaggcgaatctgat
gtattccccactagcaagtcccttgactcggcgctcaaaaagaatactgccttcatcaaa
cgtctacgcaccggcattagtgcctccgctctttccactttcctcgctgacatccgcacg
ctctcgctccacaagtacctttccgagatcatttctgcctgctacgaaggtctgtgcaag
ctcaaaacccctggagaaatcgccgctggagtggaggtcgtgagtgcgctacaccagcgt
tttggaccctgggaatttacacggcagatcggctggctgctcggccggggactaagcaca
ccggataaagcgcagctcaaggcactcagccaggagatacgggaacgcgaagagaaagac
cgcctgtctcggcaccgtgttctcctccgcgtcgttacagagctttggctggtcaatgtg
ttgaagactctcgatgatgtcgagcgacctgaggaactgggcgcgaagggcaaagaaggt
gcagttggcattgggaacaagccgtccgatgcgccgctgaaagccaagactcccgtgacg
ggtgcgaaggaccaagacaaacaggctgacccgttcccattggaggttttgaaggaattg
ctcggtcacgaccgtgatcatacaaacctgccccttgcagtcttgtttgtgaagagtttt
agctgggacatcgtcggctcaaagcttgctgaagatggtagaaaacccggtgaggtggat
ggcgctaccacgatttctgccgcggacgcacagactacagagaccaatgaggatgcccac
ttggagaccgatttgcccctaactccagagaaaactcagcagcggtttagaagcatctta
agccggtatctcgaagatgttaaggctcatgtggtgagagatcagagagcgctggcacag
caaaaccgtcgcaatgctgaagcatacgtgaagagtggtgagatctttgaggaccgccaa
gccaatttcgagaagcaatcgaaggtcctagagaagcttgtggcaaatactcaggtgctg
tgcgaggctttgggaaccgacatgcccgacctagccgagaaggaacccaccgatgcctct
gccagtggtggtattggccttgtgaagaccactgattatctaagaggccaaggcgagggt
gctgggatttgggaagacgaggaggagcgacgcttctatgagaatctggtcgatctgaag
ggcaaggtgcctgcggttttgcttgaggatggcaaaaagaagaagagcgaagccgaggag
tcggggaaaaggaagccagatggcgaaaccgccgactctgccgagccttcagacgagaag
tctgctgcggatgctgatgaccagtcaactgccattgccagcaagaccgtgggtgcccag
gtggactcccttcttgccaaacttcccgagctgcaaaccaaagatcaagtcgaccagttt
gccctggatttctgctgggtcaattctaaagcgtcacggaacaggctagtcaaagctgtg
tcggatatccccaagggtcgcattgatctcttgcccctgtattctcgcttagtggcaacc
cttggacagtacctgccagacattccacaaggactgactacttatcttgatgaagagttt
cgaagtctgcagcggcgcaagtccaaggagttcctcggtcaagtacgcatgagcaatgtt
cgctacctagctgaattaaccaaatttggtgtcgttccagaacatattatcttccattgc
ttcaaggtttcccttgacgaattttcacgcatgaacattgaaattatcggccatttgctg
gagaattgtggtcgttaccttctacgcaaccccgactcatcaccccggatggcttctttc
cttgagaccctgagtcgtaagaagaccgtgcaacatctggcccagcaggagaggatggtg
atcgaaaatgccatctactatgttgacccaccaccacgtccagcgatccagcagaaggaa
cgcacgcctatggagcagtacatccgccggttgatctatcttgatatgaacaagcggaat
tacaccaagatcttgaaatctatccgcaaacttcactgggaggagcaagaagtcgtcgag
atcctggaacgtgtgttcagcaagcccgtcaaagtgaagtatggcagcatccaccttttg
gcaattcttgtcagtgctttataccggtaccaccagggtttcgtgattggaattgtcgac
aacgtcctggagcaggtaacgcttggcctcgagcagaacgatttcaagtttaaccagaag
cgtattgcggaaatcaaatatttaggtgagctctacaactacaagatgattgattccccc
gtgatcttcgatacgttgtaccgccttatcacctttggccatgaaggtggtaccccggcc
cccggaaagatttgtatgctggacttgccagacgactacttccgcttgcgcttggcatgc
actcttctcgatacatgtggccactgcttcgaccgtggttctgccaagaagaaattggat
ttcttccttgctttcttccagtactacttatttaccaaggacccgttgcccatggatgtc
gacttccttgtccaggatacgtaccactttatccgcccgcagtggaagattgccaccgat
ggcgaagaagcaacccggatttttagcgaggctgtggccctgaactacaatgttcaggat
tccgagagaccggttgaacccgacgaagaagatgcagatagcagctcttctgacgaggat
ctcgaggaggatgctattcccgaaatagacgaagaccaggaatccagcgatgaggccgaa
gtaggtcccccatcttttctccatgaagtacgtcccattaacccgttttacccgttgaag
gcgtctggacccaacctggaggcaaatgacgacagcaatagtgagtccgaggacgaacaa
attgttgttaccagacaggaagaggagcgagacccagttaccgaggctgaatttgatcga
gaattcgagaagatgatggctgagagcatggactcgagacgtttcgaacgaaagactgtc
tttgatatccctcttcccatgaagcgcccccgcgagaacatgcccagccctgagccaatc
ccggcagaaccagttgcgcccaaaacaatggccttttccctgatgacgaagaagggaaac
aagcaacagactcgcaccatcgatctcccgtcggactcaacctttgctattgccatgcgg
agccagcaacaagccgatcgagaagaacagcaacgcattaagaacctggtcctgaactac
gaggcgtcgactgaacccgaacccaccgagagtgagcaatatcccctggctaaacggaag
aacttccaactgagataccccaaagcagcaacccaagagaagcgcacccccgctggccaa
cgaatggacaaagccggtgcgaaccggtccgctttccgttcccgtaaactccagctcagc
gacgtcaattggtaa
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integrated database retrieval system
