Penicillium digitatum: PDIP_57480
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Entry
PDIP_57480 CDS
T04849
Name
(RefSeq) Topisomerase II associated protein (Pat1), putative
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pdp
Penicillium digitatum
Pathway
pdp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDIP_57480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_57480
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PDIP_57480
mRNA degradation factors
5'-3' decay
Decapping complex
PDIP_57480
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Mug135_C
Motif
Other DBs
NCBI-GeneID:
26234064
NCBI-ProteinID:
XP_014532974
LinkDB
All DBs
Position
Unknown
AA seq
818 aa
AA seq
DB search
MAFFGFDTTLPRGRDSTGAKGFFENPDPFADIARANALGDDDVIDFEDTYDGLGDQLSDD
QDEFNDDTFGGVGPDTSVGRDFDFFGKTAQVSDAIGEEQVRFSLQNPNAGRVAPQPTQVP
VQPAATQQTTKRSGYEKYSDPGYIPDLQAKSSVWGVSQKKAEPAAALAPSRKMMSLEEVE
AQMRFHGHTTATPAAEAFLRSMVEQPQYPPQLQHLQTLPDGFPPVPPEFIQAQMKQGHLP
PQIPHPPPGMPDLYGGPGHMQLGGPLHMMQNPNLPPQNMPLPGSRHSGLPQAQRPQQSQQ
PQQLPQHQPSRASNNGMPVITNPQQLMHLTEEQRNAYLVEDAKRAKRNHKIFLLSRGNGL
MTPQDKNFITRIQLQQLVAAAGNVADSDPEAVLAEDFYYQVYSQIRGAPRQHPHQPLGHF
AQTYLLQTGNRLGGHRRGNFQSADNHMQRMQQQVQRAVEAAKAKPKNKQLIIEGSLGKIS
FSNAKAPKPMLNIKRPDSSEGPKPKKQSDLSLSDRKSILTNLEGVYSALMAMEDMERTMP
PPPEEGDAEAIQEHMEWRQKLHSLNQKLWRSLKVMEPIVPNSTIPHPFIAFLSYPKGKKA
IPRIFRHIDQEQRVTILTMIVVHLDSLDVVRLAQPVPGEAQPSLGMREAIDLFSLAVMPC
LLGYVNEAPFNIIIGLLGLVINQTHVQTVARTKVGLGILTMLLSRAEIVKEAGQASEHDW
QQWVEKFNVLFDTLELGLSDIFPGSISSGDDMYVWQFLAAVGIGASPEQQQRLVIAVKDR
VMETVGYSKTLPADMGSQRLNNVNLFMRAIGLDVELLG
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggctttctttggatttgacacaaccctgcctagggggcgtgatagtacgggagccaaa
gggttcttcgagaacccagatccctttgccgatattgctcgagctaatgcgcttggagat
gacgacgtgattgatttcgaggatacatacgatggtctcggagaccagctttccgatgac
caggacgagttcaacgatgacacgtttggcggcgtcggccccgatacatctgttggtaga
gactttgatttctttggaaaaactgctcaggtttccgacgctattggcgaggagcaagtt
cggtttagtctacaaaatcccaatgcaggtcgagtcgctccccaacccacccaagttcct
gttcagccggccgccacccagcagaccaccaagcgctcgggctatgagaagtactcggat
cccggttatattccagatttgcaagccaaatctagtgtctggggtgtttcgcagaagaaa
gccgaacctgctgccgctcttgccccgagccggaagatgatgagcttggaagaggtcgaa
gcacagatgcgttttcacggccatactaccgcaacaccagcagcggaagcctttctgcga
tcgatggtggagcagcctcagtatccacctcagctccagcacctccagacgcttcctgat
gggttccctccggtgcccccagagttcatccaagcacagatgaaacagggtcacctaccc
ccgcaaataccgcaccccccgcctggtatgccagacctctacggtggtcctgggcatatg
caacttggcggaccgttgcatatgatgcagaaccccaacctacccccacaaaatatgcca
cttcctggctcgcgccatagcggtttaccccaggcccagcgccctcagcaatcccagcag
cctcagcaacttcctcaacatcagcctagccgggcctccaacaatggaatgccggtgatc
actaatccgcagcaactcatgcatctcacagaagagcagcgtaacgcttatttggtggag
gatgctaagcgggcgaagcgcaaccacaagattttcctcctgtcccgaggaaatggtctg
atgaccccgcaggacaagaatttcatcacccgtattcagttgcaacaactggttgcggct
gcaggaaatgtcgcagattcggatcccgaggccgtgctggcggaggacttctactaccag
gtctacagccagatccgtggcgcaccgcgccaacacccccaccaacccctaggtcacttc
gcgcagacttatctgctccagaccggtaaccggctcggcgggcatcgtcggggcaatttc
cagagtgccgacaaccacatgcagcgaatgcagcagcaggtccagcgtgctgtagaggcg
gccaaggccaagcccaagaataagcagctcatcattgagggcagcttgggcaagatctcc
tttagcaatgccaaggcccctaagccgatgctgaatattaaacgccctgatagctcagag
ggacctaagcccaagaagcagtcggatctcagcctcagtgaccgcaagtcgatccttaca
aatctcgaaggtgtttacagtgcgttgatggcaatggaagacatggagcgcacgatgccg
ccaccccccgaggaaggtgacgccgaggcaatccaagaacatatggaatggagacagaag
cttcactctctcaaccaaaagttgtggcggtcattgaaggtgatggaacctattgtgccc
aactcgacgataccacacccttttatcgcattcttgtcataccctaagggcaagaaggcc
attcctcgcatcttccgtcacattgaccaggaacaacgtgtcaccatcctcaccatgatc
gtcgtccacttggatagcctggatgtggtccgtcttgcccagcccgtgccaggcgaggct
cagccatcgctcggtatgcgcgaagccattgatctgttctcgctggccgtcatgccctgc
ctgttggggtacgtgaacgaggcgcccttcaacattattattggtcttttgggattggtc
atcaaccaaacccatgtgcagaccgtggctcgcaccaaggttgggttgggcattttgacc
atgttgctcagtcgtgccgagatcgttaaggaggccggtcaggcttccgagcacgattgg
cagcagtgggttgagaagttcaatgtgctgtttgatacattggaactcggattgagtgac
attttccctggatcaatcagctccggtgacgatatgtatgtgtggcagttccttgccgcc
gtgggcatcggtgccagtcctgagcagcaacagcgtctggttattgccgttaaggaccgt
gttatggaaactgtgggatacagtaagacccttcctgccgacatgggtagccagcgcctg
aacaacgtcaatcttttcatgcgggccattggtctggatgttgagctcctcggataa
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