Penicillium digitatum: PDIP_59920
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Entry
PDIP_59920 CDS
T04849
Name
(RefSeq) Pre-mRNA-splicing factor syf1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pdp
Penicillium digitatum
Pathway
pdp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PDIP_59920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_59920
03041 Spliceosome [BR:
pdp03041
]
PDIP_59920
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
PDIP_59920
Spliceosome [BR:
pdp03041
]
Complex B
Other components
Prp19-related factors
PDIP_59920
Complex C
PDIP_59920
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_19
TPR_15
TPR_2
Mad3_BUB1_I
SNAP
TPR_17
TPR_6
NRDE-2
Motif
Other DBs
NCBI-GeneID:
26234308
NCBI-ProteinID:
XP_014533218
UniProt:
K9FLN1
A0A7T7BLH3
LinkDB
All DBs
Position
Unknown
AA seq
828 aa
AA seq
DB search
MDRSSVSRPDLYLITDQDIIYEQDLLRDASSVKPWLAYIEFKQQNGTLYEQAFVMERACK
QLPRSYKLWKMYLEFRTKHLKGRNPTVYRAEYQKVNALFERALILLNKMPRIWEMYLSFL
LQQPMVTQTRRTFDRSLRALPVTQHNRIWRLYKGFARSASGQTAIKIFARYMQIHPENIE
DYIELLVDNGEYTEAVKKFMDILDDPRFKSKHGKGPFQLWSEMVDLLVSKAKKIETGPRV
GIDVDAILRSGIQRFADQRGKLWAGLATYWITKGNFEKARDVFEEGITTVMTVRDFTLIF
DSYVEFEESIIGSLMESAAVRSDKGKSDEDADFDLDLRMLRFEQLMDRRPFLVNDVLLRQ
NPHNVIEWEKRVALWGDNKEEAVRTYTDAIAAINPKKALGKFSELWVNYARLYENGGDLD
TARVIFDKAIKVPFKSVAELAETWCEWAEMELRAENFDKAVSIMAKATQAPKKSTVDYFD
ETLSPQQRIHKSWKLWSFYVDLVESVSSLDETKKVYERIFELRIATPQTVVNYANLLEEN
KYFEESFKVYERGLDLFMYPVAFELWNLYLTKAVDRQVGIERLRDLFEQSLEDCPPKFAK
SLYLMYGNLEEERGLARHAMRIYERATRAVSDEDRFEMFEFYITKSASNFGLTSTRPIYE
RAIAALPDQEAKEMCLKFAEMERRLGEIDRARAIYGHASQFCDPRTNAPFWQKWEIFEVN
HGNDDTFGEMIRIKRSVQAQYNTDVNFIASQAIARSQQQIQTGEQGERDEDQQRADAMAE
LERQARAPVGFVAATSGPEGGNRPPPTGQGPATAEANPDAIDLDMDDE
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggatcgatcatctgtgtcccggccggacctctacttgattactgatcaggacatcatc
tacgagcaagatctgcttcgtgacgctagcagtgtcaaaccatggcttgcctacatcgaa
ttcaaacagcaaaatggcacgctttatgagcaagcatttgtcatggagcgtgcttgcaag
caactaccgcgttcctacaagctctggaagatgtatctggagttccgaacaaagcacttg
aagggccgcaatcccacggtctatcgtgccgagtaccagaaagtcaacgcactcttcgaa
cgagccctcattctcctgaataagatgccgcgcatctgggaaatgtacctctcctttctg
ctccagcagcccatggtgacccagactcgtcgaacctttgatcgttctcttcgtgctttg
ccggtcacacagcacaaccgaatctggaggttgtacaaaggctttgctcggtctgcttcc
ggacagactgccatcaagatctttgctcggtatatgcaaatccaccccgagaacatcgag
gattacatagagcttctcgttgacaacggtgaatatacggaagccgtgaagaaattcatg
gatattctcgacgacccacgattcaagtccaaacatggcaagggtccattccagctatgg
tcggagatggttgatctactagtctccaaggctaagaagattgaaaccggccctcgggtc
ggaattgatgttgacgccattctccgaagtggtatccagcgctttgcggaccaaagaggc
aagctatgggccgggttggccacatactggatcactaaaggcaacttcgagaaggcacga
gatgtctttgaggaaggaattactactgtcatgacggttcgtgattttacgctcatcttt
gactcttatgtcgagttcgaggagtccatcattggaagcctgatggaaagcgcagctgtc
cgctctgacaagggcaaatctgacgaggatgctgactttgatctcgacctccgcatgctg
cgttttgagcagctgatggaccgcagaccattcctggtgaacgacgtactcctacgtcag
aaccctcacaacgtcatcgaatgggaaaagagagtggcactctggggggataacaaggaa
gaagctgtccgcacttacaccgatgccattgctgcaattaatcctaagaaagcgctcgga
aaattctctgagctttgggtcaattatgctaggctttatgagaacggcggggacttggat
actgcaagagttattttcgataaggctattaaagttccgttcaaatctgtggcggaactg
gcagagacctggtgtgaatgggctgaaatggagctccgcgccgaaaatttcgacaaagca
gtcagcatcatggcgaaggcgacacaggcaccgaagaaatcgacggtggattacttcgac
gagacactgtctccacagcaaagaatccacaagagctggaaattatggagtttctacgtt
gacctcgttgagagtgtttcgtctttggatgagacaaaaaaggtctacgagcggatcttc
gagcttcgtatcgcgacaccccagactgtcgtcaattatgccaaccttttggaagaaaac
aagtacttcgaagagtctttcaaggtatacgagcgaggcttggatcttttcatgtatcca
gttgcattcgaactctggaacttgtacttgaccaaggctgtggaccggcaggttggcatt
gagcgactccgagacctgtttgagcagtccttggaggattgcccccccaaatttgccaag
tctctttacctgatgtacggtaacttggaagaagagcgcggtcttgcacgacacgcaatg
cggatctacgagcgtgcgactcgggcagtgtcggacgaggaccgcttcgagatgtttgaa
ttttacatcacaaaatcggcgtccaacttcggtctcacctctactagaccgatctacgag
cgcgccattgccgcattgcccgaccaagaggccaaagagatgtgcctcaaattcgcggag
atggagcgacgacttggtgagatcgatcgtgctcgcgcgatctatggccacgcatctcaa
ttctgcgatccacggacaaacgcccccttctggcagaagtgggagatattcgaagttaac
cacgggaacgacgatacttttggcgagatgattcgtatcaagcgaagtgttcaagcccaa
tacaacaccgatgtcaacttcattgcatcacaagccattgctaggagccaacagcaaatc
cagacaggtgaacaaggcgaacgcgacgaggatcaacaacgcgcagatgccatggcggaa
ttggagcgtcaagctcgtgccccagttggcttcgtggctgccaccagcggtccggagggc
ggtaaccgtcctccacctaccggccaagggccagctactgccgaggccaaccccgacgct
attgatcttgacatggacgatgaatag
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integrated database retrieval system
