Penicillium digitatum: PDIP_60050
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Entry
PDIP_60050 CDS
T04849
Name
(RefSeq) RNA helicase/RNAse III, putative
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pdp
Penicillium digitatum
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pdp03036
]
PDIP_60050
Chromosome and associated proteins [BR:
pdp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
PDIP_60050
microRNA pathway
RISC loading complex
PDIP_60050
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
ResIII
DEAD
SNF2-rel_dom
SLFN-g3_helicase
Dicer_platform
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
26234321
NCBI-ProteinID:
XP_014533231
UniProt:
K9G6R2
LinkDB
All DBs
Position
Unknown
AA seq
1372 aa
AA seq
DB search
MEPEDVTSDLSSDEAATPRLTESHRQRAQNASFTALLEEHVINTPSNSPNGEHVEVSDAE
LSTARLLAKTEPGGGVLDPLLDTGSGKTLVAVLLLKHILQMELNKRAHGTKPRVAFFLVD
TVTLVFQQSAVLRNNLDQKVAHFFGNLGPDLWDKQTWDKHLEKYMVIVCTAEILNQSLLN
GHIRIDQINLLIFDEAHHAKKEHPFARIIRDAYLKADIENRPRIFGMTASPVDAKCDLAE
AAVQLETLLDSRIATTSDLTLLRNFVNKPMEVEWVYDKLPPPSETNLHSTLKTKYGDMLI
LEGVFRFASVASTELGGWCADQVWALALADEVLPKLEGSIGKVTDSDPRDSEKASEEIKR
IQEASHLVNEYITDRAFMPSDLSPKLELLMGKLQEQFAKSPDTKCIVFTQRRNTAKVMLQ
LCEKLQIPNLRPEILVGVRKGDAIGMNSTFRRQFLVLAKFRKSEVNCLFATSVAEEGLDI
PDCNLVVRFDLYDTFIQYVQSRGRARRADSVYATMVECGNRNHSMRLQEVRRAEHLMKNF
CNLLPEDRKLYGDGHDMGVLVHEENRKRTYTVTRTGAMLTYRHAIGVLARFASSLQYENE
ISAKVTYVVMSENESFSCEVIMPEKSPVRRVLGCCESKKSLAKQSAAFDACLLLRKRNLL
DEHFNSVYHKRLPAMRNAKLAITSKRTDQYKMRTKPSIWARQQGTIPIRLYAILIRLIPS
EPLTRAHGSIVLLSREQITAIPTFPVFLDDDIETTVQSLCIDGCLEVASEELEIVTAFTL
AVFHDVFHKTYKHVSEQFPYWLVPAREDIDVGMSTSLFDIIDWTALKYVQDNPKLVWSTD
MEPESLLNRFIYDDWNGKYRYFPLAVDPNLRPSDPPPSYAPCRKWSDDIMNWSLSLSKNS
RPKFFNRCIWTQPVLQAELVCLRRNFLDKMADEEKLSNSRCVICPQPLVLSTISKSVAAT
CFVFPAIITRMESYLIAEEGCKLLGLGGIKLEFALEALTKDSDNTEEHRSLQIHVQRGMG
KNYERLELLGDSVLKMATSISLFVQNPDDDEYDYHVNRMCLICNKNLFKNATELKLYEFI
RSRGFSRHMWYPPGLSLEYGRDHAKFVDSEGKHSLSEKTIADVCEALIGASLLSGGDDHR
YDMAVKAVTVFVNSQKHTATSWKDYISAYSIPLYQKKAADGFEMNLAQQIFEKVGYEFKY
PRLLRSAFTHPSYPLTWAKVPCYQRLEYLGDALLDMVCVEHLFHRFPTRDPQWLTEHKMA
MVSNKFLGALAVKLGLHLHLQHFSNPLMIQNSKYAEELQLAESESNGEVNYWLSTSDSPK
CLPDMLEAYLGAIFVDSSFDFTVIEAFFKRHILPFFHDMSIYDTFANRHPTT
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggagcccgaagacgtgacctcagatctatctagcgatgaagctgcgaccccacggctc
acggagtctcaccgacaaagagctcagaatgcttctttcactgcactgcttgaagagcat
gttatcaacacgccgagcaatagtcccaatggggaacatgtcgaagtatctgatgcggaa
ctgtcaactgctcgtttgctcgcaaagacagaacccgggggtggagtcctggaccctctt
cttgacacagggtctggaaagactctagtggctgtgcttttgctcaagcacattctccaa
atggaacttaacaaacgtgcacatggcacaaaacctcgcgttgccttctttctggtggac
actgtaaccttggtctttcaacagtctgcagtattgcggaacaatctcgaccaaaaagtc
gctcattttttcggcaatcttgggcctgacctttgggacaaacagacgtgggacaaacat
cttgaaaagtacatggtgattgtatgcacggcagagatcttgaaccagtctctactgaat
ggccacataaggattgaccagattaatcttctgatcttcgacgaagcccaccatgccaaa
aaggagcatccgtttgctcgtattatccgagacgcctatctaaaagcagatattgaaaat
cggccaaggattttcgggatgactgcttcccccgttgatgctaagtgtgacttagctgaa
gcagcagtccaactcgagactcttttagatagtcgcattgcaacaacatctgatcttacc
ctcctgcgaaattttgtgaacaagccaatggaggtagaatgggtctacgacaagcttcct
ccgccgtctgagaccaacctgcatagtaccctgaaaacaaagtatggggatatgctgatc
cttgaaggcgtatttcgatttgcatcggttgcaagcacagaattaggtggttggtgcgca
gaccaggtatgggctctggctctggcggacgaagtgctgcccaagctggagggcagcatc
ggcaaagtcaccgattctgatcctcgggattctgaaaaggcctcggaggagatcaaacga
atccaagaagccagccatcttgtcaacgaatacattacagaccgggcatttatgccgagt
gatctcagtcccaaactcgagcttttgatgggaaagctgcaagaacagtttgcgaagtcg
ccagataccaaatgcattgtgttcacgcaacggcgcaataccgctaaagtaatgttacaa
ctatgcgaaaagctgcaaattccaaacctccgtcctgagatcttggtcggtgttcgcaaa
ggagatgccataggaatgaattccacatttcgtcggcagtttctggttttggccaagttc
cgaaaaagtgaagttaactgcttgtttgcaacatcggtcgcagaggaaggtcttgacatc
ccagactgtaacctggtggttagattcgatctgtatgacacttttatccaatatgtccaa
agccgaggccgtgccagacgcgccgactcagtgtacgcgaccatggttgaatgtggtaat
cgtaaccacagcatgagactacaggaagtccgaagagcagagcatctcatgaagaatttc
tgtaacctgctgccggaggatcgaaaattgtacggagacggtcacgatatgggagtgctc
gtgcatgaggaaaatcggaagagaacatacaccgtcacgaggacaggcgccatgttgacc
tatcgccatgcgattggtgtactggcacggtttgccagctcgttgcaatacgaaaatgag
atttcggccaaggttacatacgttgtcatgtcagaaaatgaatcattcagctgtgaggta
atcatgccggagaagtcgcctgtgcgaagagtgcttggatgttgcgaatcaaagaaatca
ctcgctaagcaatccgctgcttttgatgcatgccttctgcttcgcaaaagaaatctactg
gacgagcacttcaactctgtctaccacaaacgcctgccagcgatgcgcaatgccaaattg
gccattacttcaaaaaggactgaccagtacaagatgcgtaccaagccttcaatatgggct
aggcagcagggaaccattccaatacggctttacgcaatactcattcgtctcattccatcc
gagcctttgacccgagctcacgggagtatcgtcttgctatcacgagagcaaattacagca
ataccgacttttcctgtcttcttggatgacgatatcgagactactgtccagtctttgtgt
attgatgggtgccttgaggttgcttccgaagagctagaaattgtgaccgcatttacgctt
gctgtctttcatgatgtttttcacaagacttacaagcacgtctcggaacagtttccgtac
tggcttgtacctgctcgtgaagatatcgacgttggaatgtcaacaagtctctttgacata
attgattggactgctttgaaatacgttcaagataaccccaaacttgtgtggtctactgat
atggagccggagtcattactgaatcgattcatctacgatgactggaatggaaagtatcga
tacttcccgcttgctgtagaccccaatctacgtccttcagacccacccccatcttatgca
ccatgtcgaaagtggtcagacgatatcatgaattggtcattgagtttgagcaaaaattca
cgtccaaaattcttcaaccgatgtatctggactcagccggtcttacaggcagagttggtc
tgccttcggcggaactttcttgacaaaatggccgacgaagaaaaactatccaactcgaga
tgcgttatttgtcctcaaccattggtcttgtccacgatttctaagtcggtggccgcgacg
tgttttgtctttccagcaattatcacacgaatggagtcatatctgatcgccgaggaggga
tgcaaattgttgggtcttggtggtattaagctcgaatttgccctggaagccctcaccaag
gattcagacaacaccgaagagcatcggagcctacagattcacgttcagcgaggaatggga
aaaaattacgagcggcttgaattgctaggggattctgttctcaagatggcaacatcgatt
tcgctctttgttcaaaatcccgacgatgatgaatacgactatcacgttaacagaatgtgt
ctcatctgcaacaagaacctttttaaaaacgcaactgaactaaagctttatgagttcata
cgtagtcgtgggttttctcggcatatgtggtatcccccaggtctttcgcttgagtatggt
cgggaccacgccaaatttgttgatagtgaaggcaagcactccttatccgagaagactata
gcggatgtctgcgaggcattaataggagcatcgttgctctcaggaggcgacgatcatcgt
tatgacatggccgtcaaagctgtgaccgtcttcgtcaatagccagaaacacaccgcaacc
tcatggaaagactacatctctgcatactctattcccttgtaccaaaagaaggcggccgat
gggtttgaaatgaacttggctcagcagatcttcgagaaagtaggctacgagttcaagtat
cctcgtcttctgcggtcagcgttcacgcatccgtcttatccattgacatgggccaaggtc
ccttgctaccaaaggctcgagtacttgggtgatgcactcctggacatggtgtgcgtggag
cacttgtttcatcggtttcccactcgagatccgcagtggttgactgaacacaagatggcc
atggtctccaacaagtttctcggtgctttggctgtaaaactagggcttcatcttcatctt
cagcatttcagcaatcctctcatgattcaaaacagcaaatacgcggaagagcttcagctt
gcagagagcgaaagcaatggagaggtaaactattggctttcgacgtcagattctccaaag
tgtcttcccgacatgcttgaggcttatctcggtgccatatttgtggattctagtttcgac
ttcacagtgattgaggcctttttcaagagacatatcctgccgttctttcacgacatgtca
atctatgacacgtttgcaaataggcatccaacaacctaa
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