Penicillium digitatum: PDIP_60450
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Entry
PDIP_60450 CDS
T04849
Name
(RefSeq) mRNA cleavage factor complex II protein Clp1, putative
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pdp
Penicillium digitatum
Pathway
pdp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PDIP_60450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_60450
Enzymes [BR:
pdp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
PDIP_60450
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
PDIP_60450
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_N
CLP1_P
Clp1
ATP_bind_1
nSTAND3
AAA_35
AAA_24
Motif
Other DBs
NCBI-GeneID:
26234361
NCBI-ProteinID:
XP_014533271
UniProt:
K9FM71
A0A7T6XNF8
LinkDB
All DBs
Position
Unknown
AA seq
549 aa
AA seq
DB search
MSLPGLELTQPSEERSQAPAPPSQINLTPGSEWRFEVAFGHVIKVKLLNGTAELFGTELA
ESQTYTFTGTKAAIFTWHGCTLEVSAAETVSNPSDGVTPTVGHGAGGCQSEYTAEETPMV
EYANVHFALETMREEAQSIGKDGPRVLLLGSENTGKTSLAKILTAYATKIGRQPLVVNLD
PTEGMLGVPGTLTATAFRTILDVEDGWGSSPMSGPSPVPVKLPLVYSYPMQSPLDGEGAV
YRPVVSRLALSVTGRMAEDEDARETGIIVDTPGILGTDKPGTMDLINHIVTEFSITTILV
LGSERLYSTVARQYDNKPTSSATATVFDEHISVVKLSKSGGCADRDEAFRKATRESQIRS
YFFGNPIPSSSPSSAITLSPHAQQLDFASLPVYNYTVSSADDEDEDEYDPSQLGTGDSFL
PGGGGMDDYTPQETKPDLDRAAPLPGVVGSFSESADHANFNVNGSVPLKKVLPPAPSALA
NTLLAITHAPATASPTEVRDASIMGFLYVADVDADKGKIRVLAPVGGRMPPRAIIWAKRW
PGELVGLVG
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcccgggtctcgagctaacacagccatcggaagaaagatcgcaggcaccggcg
ccaccatcgcagatcaacctgaccccaggctcggagtggcggtttgaggttgcgtttgga
catgttatcaaagttaagcttctcaatggtaccgccgaactcttcggaacagagcttgcc
gaatcccaaacctacacattcaccggcacaaaagcggcaatcttcacatggcatggctgt
acactcgaagtcagcgcagcggagacagtatcaaatccctctgatggagtaacaccgaca
gtgggacacggcgcaggaggctgccaaagcgaatacacggccgaggaaaccccaatggtg
gaatatgccaacgtccactttgcgctggagacaatgcgcgaagaagctcaatcaataggc
aaggatggcccgcgagtgcttcttctcggctctgaaaacaccggaaagaccagtttggct
aaaatcctaactgcctatgcgacgaagatcggccgtcagccgttggtcgtgaacctcgac
cctaccgagggtatgctgggtgtccctggtacactgactgcgactgccttccgcaccatc
ttagacgttgaagatggttggggaagtagtcccatgtccgggcccagtcccgtaccggtc
aagctgccgcttgtgtacagttacccgatgcaaagcccgctggatggcgaaggcgccgtg
taccgaccagtcgtttcgcgtcttgcgctatccgtcacgggccggatggccgaagacgag
gatgcccgtgaaacgggaatcatcgttgatacgcccggaatccttggcacagacaagccg
ggcaccatggacctcatcaaccacattgtcacggagttctcgatcaccacgatcctggtt
ctgggttcggagcgcctgtacagcaccgttgccagacaatacgacaacaagcccacttcc
agcgcaacagccactgtcttcgacgagcacatctccgtcgtcaagctctctaaatcgggt
ggttgtgctgaccgtgacgaggccttccgcaaggcaacgcgggagtcccaaatccgttcc
tacttcttcggaaaccccatcccctcttcctcgccctcttccgccatcacactttctcct
catgcacagcagcttgacttcgcctcccttcccgtatacaactacaccgtctcctccgca
gatgacgaagacgaagacgaatatgacccttcccagctgggaacaggcgattccttcctc
cccggtggtggcggcatggatgactacaccccacaagaaacaaagccagacctagaccgc
gccgccccccttcctggtgtcgtaggttcattctccgaatccgccgaccatgcgaatttc
aacgtcaacggcagcgttcctctgaagaaggtccttccacctgctccctctgctctggca
aataccctccttgccatcactcatgcccctgcgacggcatcccccaccgaagtccgtgac
gccagcatcatgggcttcttgtatgttgccgacgtcgacgcggacaagggcaagatccgt
gtgcttgcgcctgttggtgggagaatgcccccacgcgctattatatgggcgaagcgttgg
cctggtgagttggtggggttggtgggttag
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