Penicillium digitatum: PDIP_61710
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Entry
PDIP_61710 CDS
T04849
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pdp
Penicillium digitatum
Pathway
pdp03013
Nucleocytoplasmic transport
pdp03015
mRNA surveillance pathway
pdp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PDIP_61710
09122 Translation
03013 Nucleocytoplasmic transport
PDIP_61710
03015 mRNA surveillance pathway
PDIP_61710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_61710
03041 Spliceosome [BR:
pdp03041
]
PDIP_61710
Enzymes [BR:
pdp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PDIP_61710
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PDIP_61710
Spliceosome [BR:
pdp03041
]
Complex C
Other components
EJC/TREX
PDIP_61710
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PDIP_61710
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Ned1_M
DUF4844
Motif
Other DBs
NCBI-GeneID:
26234487
NCBI-ProteinID:
XP_014533397
UniProt:
K9G5B7
A0A7T7BLN8
LinkDB
All DBs
Position
Unknown
AA seq
442 aa
AA seq
DB search
MSHEEDLIDYSDEELQTTTAPTTTAAPATTNGDADKQGDLTVTGGRPDKKGSYVGIHSTG
FRDFLLKGELLRAITDCGFEHPSEVQQVCIPTSILNVDVLCQAKSGLGKTAVFVLTTLHQ
LEPVPGECQILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEILSNKET
HPNIVVATPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQV
MMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLDEKEKNRKLNELLDN
LEFNQVIIFVKSTQRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVAT
DVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEDDEKVLKEIE
KRFEVALPEYPEAGVDSTTYMA
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaggaagatcttatcgactactctgatgaggagcttcagaccaccacagca
cctaccaccactgctgcgcctgccaccaccaatggcgatgccgacaagcaaggtgacttg
actgtaaccggtggccgccccgacaagaagggcagctacgtcggtatccactcgaccggt
ttccgcgacttcctgctgaagggtgaacttctgcgcgccatcaccgactgcggcttcgaa
catccatcggaggtccaacaagtttgcatcccgacttctattttgaacgtcgatgttctt
tgccaagccaagtccggtcttggtaagaccgcggtctttgttctcaccacccttcaccaa
ttggagcccgttcctggcgagtgccagatcctggttatgtgccacacccgtgagctagct
tatcagatcaagaacgagtacgcccgtttctcgaagtatttgcccgacgttaagactgcg
gttttctacggtggtaccccaatccagaaggacgtcgagatcctgtccaacaaagaaacc
caccccaacattgtggtcgccactcccggtcgtctgaacgcgctggtccgcgacaagaaa
ttgtccttgcgcaacgtgaaggcttttgttctcgatgagtgtgacaagatgcttgaccag
atcgatatgcgccgtgatgtccaggaaatcttccgtgccactcccgctgacaagcaggtc
atgatgttcagtgccaccctctctcaggagattcgtcccatctgcaagaagttcatgcgc
aacccgctggaggtctatgtcgatgacgacaccaagctcactcttcacggcttgcaacag
tactacatcaagctcgacgagaaggagaagaaccgtaagctgaatgagcttttggacaac
cttgagttcaaccaagtcatcatcttcgtcaagagcactcagcgtgccaacgagctggac
aagctgttgcgagagtgcaacttccctagtatcgcagttcactctggtgtcagccaggag
gagcgtatcaagcgctacaaggagttcaaagagttcaacaagcgcatctgtgttgccact
gatgtctttggccgtggtattgatatcgagcgcattaacctcgcaatcaactatgatctt
cccgccgacgccgactcttaccttcaccgcgttggtcgtgccggtcgtttcggtaccaag
ggtctttctatctccttcgtcagcaacgaggatgatgagaaggtccttaaggagattgag
aagcgctttgaggttgcccttcctgagtaccccgaggctggtgttgactctaccacctac
atggcctag
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