Penicillium digitatum: PDIP_62160
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Entry
PDIP_62160 CDS
T04849
Name
(RefSeq) 3' exoribonuclease family protein
KO
K12586
exosome complex component RRP43
Organism
pdp
Penicillium digitatum
Pathway
pdp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDIP_62160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_62160
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PDIP_62160
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
26234532
NCBI-ProteinID:
XP_014533442
LinkDB
All DBs
Position
Unknown
AA seq
387 aa
AA seq
DB search
MVSSATTSNPTPPSLSLPPSQFARLQPHAYLLAHLSPPPASNQPSIRANGRTASQFRVTS
ANAGSLTHTNGSAVVRIGDTAAVCGVRAEILDTKDIASWSVLQASSEKTLDKSNDVGASE
SQDEEDQGHIQDLNLLVPNLSLSTGCAPGFTPGAPPSALAQALSHQILSLLHTSRLVRAD
DLRIWYQPPNLDSEEFRNAGEAMDVDTEQSEGPEREVKAFWVLYIDVMIISLAGNPFDAA
WASVLAALRDTKLPKAWWDADNETILCSDDVSNARKLSLRGLPVASSFCSFEGDAAAGWR
AVVIPDADEQKRKKGAQQRWILADPDGYEEGLSQERASVVVDKESGKTVIVKIEKHGGWA
VDSDDLRQLVDVSAQRWDEMKRILDQC
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcctccgctacaaccagtaacccgactcctccgtcattatccctaccaccgtct
cagttcgcccgcctccaacctcacgcctaccttctcgcccacctctctcctccaccagcg
agcaaccagccctcaatccgtgcgaacggtcgtaccgcctcacaattccgtgtcacatct
gccaatgccggctctctaactcacacaaatggcagcgcagttgtacgaatcggagacaca
gccgctgtctgcggcgttcgtgcagagatcctagacaccaaggacattgcttcctggagc
gtgttgcaggcctcatcagagaaaacactcgacaagtcaaatgatgtgggagcctcagag
tcccaagatgaagaagatcaaggccacatccaagatctgaacctacttgttcccaacctt
tccctcagcaccggctgcgcgccaggctttacacctggtgcaccaccttctgcgctagct
caggcactctctcaccaaatcctttccctcctgcacaccagccgtctcgttcgagcagat
gatttgcgcatctggtatcagccaccgaatctggattcggaagaattccgcaatgcgggc
gaggcgatggacgtggatacagaacagagtgagggtcctgagcgagaagttaaggcattc
tgggtgctttacattgatgtcatgatcatttctttggctggaaacccattcgacgcggct
tgggcctctgtcttggctgcgcttcgggacacgaagcttcccaaggcctggtgggatgcc
gataacgagacgatcctttgctcagacgatgtttccaatgcgcgaaagttgtctctgcga
ggtctgcctgttgccagctcgttctgctccttcgagggtgatgccgctgctggctggagg
gcggttgtcattcccgacgctgatgagcagaagcggaagaagggtgcacagcaaaggtgg
atccttgcggatccagatggatacgaggagggattaagtcaagagcgggcttctgtcgtt
gttgataaagagagtggtaagacggttattgtgaagatagagaagcatggtggttgggct
gtggatagtgatgatttgcgccagcttgtggacgtttctgctcagagatgggatgaaatg
aagcgcatactggatcaatgctga
DBGET
integrated database retrieval system
