Penicillium digitatum: PDIP_64670
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Entry
PDIP_64670 CDS
T04849
Name
(RefSeq) DEAD/DEAH box RNA helicase (Ski2), putative
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pdp
Penicillium digitatum
Pathway
pdp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDIP_64670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_64670
Enzymes [BR:
pdp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PDIP_64670
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
PDIP_64670
mRNA degradation factors
3'-5' decay
Ski complex
PDIP_64670
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
26234783
NCBI-ProteinID:
XP_014533693
LinkDB
All DBs
Position
Unknown
AA seq
1305 aa
AA seq
DB search
MADSLDSPMEKLHLEGKQFDPTTFDARLADEANGKIENFQARKQASQSAQELLTELENEF
LTPSDKFSNKWLNSLQRRWDVSTDYADLFELAPTQTRTVTRFTREGLEGRVTGYQEVTVP
AASATAKNSTSLLRRPAGRAEFVRGAAGFFPFAPGGLDAIEALAAMEADAQVTEQSSNGK
QSGLDRIINFGTEGGLLTTPPGFDHGVEFDEAESKDATESAQEVEAALLQEESDLNVDQP
EDAADVDTGAKDELDVVSDDEDEEDIDALLPVEFPALEPRGQLLAGAHKQKGKEWAHVVD
INKEIPNFNELVPDMAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIAL
AAKHMTKAIYTSPIKALSNQKYRDFRTEFDDVGILTGDVQINPEASCLIMTTEILRSMLY
RGADLIRDVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTREFASWVG
RTKKKDIYVISTHKRPVPLEHYLWAGKSKHKIVDSNKRFLESGWKEADDILSGKDKAKAK
KEAEAQAQSAQAKAPATQGRGRGQPANIRGGRGGPQRGGPQRGGPQRGRGQSGGQYSNRG
TGNIARTGRGGGRTSAAQDKNTWVHLVSHLRQEDLLPGCVFVFSKKRCEENADSLSNQDF
SNANEKSLTHMFIEKSLTRLKPEDRTLPQILRLRELLSRGIAVHHGGLLPIMKEVVEILF
ARSLVKVLFATETFAMGLNLPTRTVVFSGFRKHDGKSFRDLLPGEYTQMAGRAGRRGLDT
VGYVIVTNSGKDEAPSAASLKQMILGDPTKLRSQFRLTYNMILNLLRVEALKIEEMIKRS
FSENATQALLPQHEKQVEVSEASLAKIKRPPCEICDLDLMTCHNAAMEYRKLTAEFHAEL
LSSPVGKRLFTTKRLVVYRKDGLRTAGVITRDGVSAGVVGTMPCIQVLEIGTISSKRHPT
DILPFLPMFRPCFESLPNRVDDMSLRVCKIPLSDLECVTNTQVKITKPMWYLNIKKESIK
WAERELCQFTNSWIDTTWDEVDWQRIKEMEIRDILDKRQIQAEIAQSCHCLQCPDFVNHF
EMQHDEWQVKENISELKQLMSDQNLQLLPDYEQRIHVLRELGFVDEQSRVQLKGKVACEI
HSADELVLTELVLENVLAEYEPEEIVALLSAFVFQEKTDSTPTLTPRLEKGQKEIIRIAE
KVNDFQILHQVIQSSEDSNDFASKPRFGLAEVVYEWAKGMSFNRITDLTDVMEGTIVRVI
TRLDETCREVKNAAKLVGDPSLHTKMQQAQELIKRDVIFAASLYM
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atggccgactcgctggattctccaatggagaaattacacttagagggtaaacaattcgac
cccacgaccttcgatgctcgtcttgcagatgaagcaaatggcaagatcgagaactttcaa
gctcggaagcaagcttctcagagtgcccaagagttgctaacagagcttgaaaatgagttt
ctgaccccatcggacaaattcagcaataaatggttgaattctctccaaaggcgatgggat
gtctcgacagattacgcagacctcttcgaactcgccccaacacaaacacggacagtgact
cgtttcacacgagagggattggaaggacgcgttactggatatcaagaggtcacagttccc
gctgcaagcgcaacagccaaaaactcgacatcacttctccgccgacctgctggccgtgcc
gagtttgtaagaggcgccgcgggtttctttccattcgctcccgggggactagatgctata
gaggccttggcagcaatggaggctgatgctcaggtcacagaacaatctagcaacgggaaa
caatctgggctcgatcgcatcattaactttggcaccgagggaggtcttctgaccacaccc
cccggctttgatcatggtgtcgagttcgatgaagctgaatccaaagatgctaccgaaagt
gcccaagaagtcgaggccgcccttcttcaagaggaaagcgacctgaatgtggatcaaccc
gaggatgctgcggatgtggatacaggagcaaaggacgagcttgatgttgtcagcgacgac
gaagatgaagaagatatcgacgctttgctaccggttgagttcccggcattggaaccgcgt
ggccagttgctcgcaggtgctcacaaacaaaagggtaaagaatgggctcacgtagtcgac
atcaacaaggaaattccgaacttcaatgaattggttccagacatggccagagagtggccg
ttcgagctcgacaccttccagaaggaggctgtttaccaccttgagaacggcgattcggtg
tttgttgcggctcatacctcggcaggcaagacagttgtggctgaatatgcaattgccttg
gctgctaaacacatgaccaaagccatctatacgtctcccatcaaagctctgagcaaccaa
aaataccgtgatttcagaacagaattcgacgatgtcggtattttgacaggtgacgttcaa
atcaacccagaagccagctgtctcatcatgactactgagatcttgcgaagtatgctgtac
cgaggcgctgatctcatccgggacgttgaattcgtcattttcgacgaggtgcattatgtg
aacgacctcgaacgaggtgtggtatgggaagaagtcattattatgcttccagagcatgtt
acattgattcttctctctgccactgtgcccaatacccgcgagttcgcatcctgggtaggc
cgcacaaagaagaaggacatttacgtgatttcaactcacaagcgacctgtccctctggag
cactatctctgggccgggaagagcaagcacaagatcgtcgactccaacaaaagattcctt
gagagtggctggaaggaagccgatgatattctgtccggcaaagacaaggccaaggctaag
aaggaggctgaagcccaggcacagtcggcgcaagctaaagcaccagccactcagggccgg
ggacgtggtcagccagcgaatatcagaggtggtcgcggtggcccacagcgtggaggtccg
caacgtggaggtccacaacgaggtcgcggacagagcggcggacagtattccaaccgagga
acgggaaacattgctcgcacaggccgtggcggtggtcgtacaagtgcggcccaggacaag
aacacttgggtgcatcttgtttcccatcttcgccaagaagacttactgccgggatgcgtc
ttcgttttctccaagaagcgatgcgaggagaacgcggattcactatcaaaccaagacttc
agcaatgccaatgagaagagtttgacacatatgtttattgagaagtcactcacccgattg
aagcctgaggaccgcacgctaccgcaaattcttcgccttcgcgagttgctcagcagagga
attgctgtacaccatggcggtctcctgcccatcatgaaggaagttgttgagattcttttc
gctaggtctctggtcaaggttctgttcgccacagaaaccttcgcgatggggttgaatctt
cccacccgaacagtggtattttctgggttccgcaaacacgacggcaaaagcttccgtgat
ctccttcccggcgaatatacgcaaatggcgggacgtgctggtcgtagaggtcttgacacg
gtggggtatgttatcgtgacaaacagcgggaaagacgaggccccatctgctgcctcactg
aaacagatgattcttggagatccaactaagctcaggtctcaattccgactcacatacaac
atgatactaaatctgttgcgtgtggaagccctgaaaattgaggaaatgattaagcggagt
ttcagtgaaaacgcaacacaagctctcttgccgcaacacgaaaagcaagttgaggtatct
gaggccagtcttgcgaaaatcaaacggccaccttgtgaaatctgtgacctggatttgatg
acctgtcataacgccgctatggaatatcgaaaactcacagccgaattccacgccgaactg
ttgtcatcccctgtaggcaaacgtcttttcacaacgaagaggttggttgtgtaccgcaag
gacggactacgcactgcgggtgtcatcacgcgcgatggagtttccgcaggagttgtaggg
accatgccttgtattcaggttcttgagatcggaaccatcagtagcaaacgacaccccacc
gacattcttccattcttgcctatgttccgaccctgcttcgaatcgctacctaatcgcgtc
gatgacatgagtcttcgagtatgcaagatcccattatccgatctcgagtgtgtgacaaac
acccaagttaagattacaaagcctatgtggtatctgaacattaagaaagagtccatcaag
tgggccgaaagggaactgtgtcagttcaccaactcgtggatcgatacgacctgggacgaa
gtcgattggcaacgcatcaaggagatggaaatccgcgatattctcgacaaacgacaaatt
caggcagagattgctcagtcatgtcactgcctacaatgccctgatttcgtgaaccatttc
gaaatgcaacacgacgagtggcaggtcaaagaaaacatctcggagctgaagcaactgatg
tccgaccaaaaccttcaactacttcctgattatgagcagcgcatccacgtgctgagggag
ctcggctttgttgacgaacaatcgcgtgtacagttgaagggcaaggtggcatgcgagatt
cactctgccgacgagctggtgctgactgaattggttcttgagaacgttcttgctgaatat
gaaccggaggagattgttgcactcctctctgcatttgtgttccaggagaagacagatagc
acccccaccctcacacctcgtctggagaagggtcagaaggagatcattcgtattgccgag
aaagtgaatgatttccagattttgcaccaggtcattcagtctagtgaagattccaacgac
tttgccagcaagccacgcttcggtctcgccgaagttgtttacgagtgggccaaaggaatg
tctttcaaccgcatcacggatctcactgacgtgatggagggcactattgttcgggtgatc
acccgactggacgagacttgtcgtgaagtgaagaatgcagccaaactggtcggcgacccg
tcacttcacacgaagatgcagcaagctcaggagttaatcaagcgcgatgtcatcttcgcg
gcttctctctacatgtga
DBGET
integrated database retrieval system
