KEGG   Penicillium digitatum: PDIP_69100
Entry
PDIP_69100        CDS       T04849                                 
Name
(RefSeq) Small nucleolar ribonucleoprotein complex subunit (SOF1), putative
  KO
K11806  DDB1- and CUL4-associated factor 13
Organism
pdp  Penicillium digitatum
Brite
KEGG Orthology (KO) [BR:pdp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pdp03009]
    PDIP_69100
   04121 Ubiquitin system [BR:pdp04121]
    PDIP_69100
Ribosome biogenesis [BR:pdp03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    PDIP_69100
Ubiquitin system [BR:pdp04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     PDIP_69100
SSDB
Motif
Pfam: WD40 Sof1 WD40_Prp19 WD40_CDC20-Fz WDR55 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd EIF3I WD40_MABP1-WDR62_2nd WD40_RFWD3 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_EML Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_WDR19_1st Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_SCAP WD_LRWD1 NBCH_WD40 eIF2A Beta-prop_HPS5 DUF1481
Other DBs
NCBI-GeneID: 26235226
NCBI-ProteinID: XP_014531067
UniProt: K9FJF5 A0A7T7BJ44
LinkDB
Position
Unknown
AA seq 447 aa
MKIKALSRSTASQQAPGSAVVRQSRNLDPTQHPFERAREYTRALNAIKMERMFAAPFLAQ
MGNGHVDGVYSMAKDPGSLERFASGSGDGVVKVWDLTTQGEVWNTQGHENMVKGLCWTPE
RKLLSCASDKTIKLWDPYNSSSEAPPMATYLGNSAFTSVTHHRTLPSFAAASGVISIYDL
SRPSSTPSQTLHWPTSVDTITSVAFNQTETSILASTAMDRSVIMYDLRTSQPVHKTILRL
ASNAISWNPMEAFNFAVANEDHNAYIFDMRKMDRALNVLKDHVAAVMDVDFSPTGEELVT
ASYDRTIRLWNRSTGHSRDIYHTKRMQRVFSATFTPDNKYVLTGSDDGNVRLWRANASDR
SGIKTARQRSKLEYDQALIKRYSHMPQIRRIKRQRHVPKPIKKAGEIKREELNAIKRREE
NVRKHTKKSNLAPRTHEREKMILAHEQ
NT seq 1344 nt   +upstreamnt  +downstreamnt
atgaaaatcaaagcactctcgcgctccacggcgtcgcagcaggcccctgggtccgctgtc
gttcgccagtcgcggaatctcgacccgactcagcatccttttgagcgggctcgtgaatat
actcgagctctgaatgcgatcaagatggagcgtatgtttgctgctccattcttagcgcag
atgggcaacggacacgtggacggtgtttactcgatggcaaaggatcctggctcgcttgaa
cgctttgcaagtggcagtggcgatggtgtggtgaaggtgtgggatctgacgactcagggc
gaggtttggaatacccaaggccatgaaaacatggtcaagggtctgtgctggacaccggag
cgaaagcttctgtcatgtgcgagtgataagacgattaaattgtgggatccttacaactca
tcatctgaggccccaccgatggcaacctatctcggaaatagtgccttcaccagtgtcaca
catcaccgaaccctcccttcttttgctgccgcttctggtgtcatttcgatttatgacctt
tcccggccttcctctacaccatcgcaaactctgcactggccgaccagcgttgataccatc
acatctgttgcgttcaaccagactgagacttccatcctggcttcgactgccatggaccgc
tcagtcatcatgtacgacctgcgtacctcccagccggtgcataagacgattttgagactg
gcatccaacgccatttcttggaacccaatggaagcgttcaattttgccgtggcaaacgag
gatcacaacgcgtacatattcgatatgagaaagatggaccgtgctctcaatgtcctgaag
gaccatgtggctgctgttatggatgtcgatttcagtcccacgggtgaagagctggtcact
gcctcatacgatcggacaatacgtctatggaacagatcaaccggtcactcgcgtgacatt
taccacacaaagcggatgcaacgtgtcttctcggcaacattcacgcctgacaacaagtat
gtcttaacaggatcggacgatggcaatgttcgcctctggcgtgccaatgcatcggaccgc
agtggaatcaagactgcccgtcaacgttccaagctggagtacgatcaagctctgattaag
cggtactcacacatgcctcaaattcgccgcatcaaacgccagcgtcatgtgcctaagcct
atcaagaaggccggtgaaatcaagcgtgaggagctcaatgctatcaagagacgtgaggag
aatgtgcgcaagcatactaagaagagcaacctggcgccgagaacccatgagcgtgagaag
atgattctggcccacgagcaataa

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