Penicillium digitatum: PDIP_80040
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Entry
PDIP_80040 CDS
T04849
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit (Pan2), putative
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
pdp
Penicillium digitatum
Pathway
pdp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDIP_80040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_80040
Enzymes [BR:
pdp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
PDIP_80040
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PDIP_80040
mRNA degradation factors
3'-5' decay
Pan complex
PDIP_80040
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
Beta-prop_THOC3
PEP5_VPS11_N
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
CcmH
Motif
Other DBs
NCBI-GeneID:
26236320
NCBI-ProteinID:
XP_014532161
UniProt:
K9FU97
A0A7T6XGA1
LinkDB
All DBs
Position
Unknown
AA seq
1170 aa
AA seq
DB search
MEADWDELSRIPMPPPSPHAMPTVATATAFDDMMELLWTGNEYGRVSSFYGPELQRYTSV
RAHPVSEGSVRQIIFHERGVISLSSKSVHMITRRGLTQWHLTHDEMVDLRCMSFTAQTNR
ILVAGSQRVMFTVDIDKGTIVEKLPTEHGYTMMKKSRYLCAATDTGSVNALSLSDFSVVK
SWKAHGTGVNDMDARNDLLVTCGFSVRHLGSPIVDPLANVYDLKTLTPLPPIPFHAGAAY
VRMHPKLHTTSFVASQTGQLQVIDLMNPNSVNLRQANVSLVLGIDLSPSGEALAINDAEC
SIHLWGSPTKVHFNELSKETEFADVPTRPSQVDWSSESPLNMVGMPYYHERLFSAWPSHL
LFEVGSPPAPLDQSMLPYLRPAEIGHHAPNPRKTRRYQIENTRALTTAEPALIAPKFLSE
KARDYSKSDGLVGDAAEALVGAKINGESDDDPLLKYSNVEIKYSRFGVDDFDFRFYNKTS
FSGLETHISNSFTNSLLQLFKFIPLFRNLALNHAAGSCIFEHCLLCELGYLFDMLEKASG
QNCQATNLLKTFSSFREASNLGLFEENLTNKSLSTAIQAVNRFFLTQVAQDFRTIQPNSE
ELDQRLATIASESIRCMFCQNEIVRPGNSLANELIYPNIDIKHVRRNPLFRFSNILRASI
ERETQNRGWCNYCRRYQQVTIRKTIHRMPLILMLNAALTNPLCRRLWAIPGWLPDAVGVL
VDASGQVMCFEGDDLRVRIQNQTPGLAVYDLIGLVAEIDIPEHQKPHLVSFVNVSISGAE
SEEQGKWHLFNDFLVTEVDRDEALRFTQPWKQPSVLAYQVRDPRHVVDDSWKKVLDKTLL
FREWSLNGGHQVESCQTLTEEEMPQPGTPVALDTEFVDLEKAEIDVKADGSKEMVRPNKS
GLARVSVLRGVGVHEGAPFIDDYITIREPIVDYVTQYSGIKPGDLDPRTSEHNLVPLKVA
YKKLWLLLNLGCVFVGHGLASDFRKINIQVPKTQTVDTQYLFFHPGKNRRLSLRYLAWAV
FKEHIQEEPAPDTLQGHDSIEDARMALRLWKKFQEYEDAGIVSQMLEEIFREGSKLGFRP
PPKNGGTITVLSRPGTAVTLQNDSGRNTPSTPDTRSVVPVALTSAAPIAGPPSAPTTPRQ
AFRRSMALTPSNGSFSGPGTGDFFGGSPLR
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgactgggatgagctgtcgcgtatcccaatgccgccgccgagtccgcatgcc
atgccaactgtggcaacggcgacggcatttgacgatatgatggaacttttgtggacaggc
aatgaatatggcagggtctcttccttttacggaccggagctgcaacgttatacctctgtt
cgagcccatccagtttctgagggctcagtacggcaaataatcttccacgaaagaggcgtg
atttcgctatcatcaaagagtgtgcatatgattacccgacggggtttgacacagtggcac
cttactcacgatgaaatggtcgacctccgctgcatgagcttcaccgctcaaacaaatcga
atccttgtcgcaggttctcagcgcgtgatgttcacggtagatattgataagggcacaata
gtcgagaagctgcccactgagcacggctacacgatgatgaaaaagagtcgatatctctgt
gcggccacagatactggatcagtcaatgcccttagtctctcggacttcagtgttgtcaag
tcatggaaagctcacgggacaggcgtaaatgacatggatgcgcgaaatgacctgctggtc
acctgtggcttctcagtccgccaccttggatcgccaatcgtggatcctctagccaatgtt
tatgacttaaaaaccttaacaccgttacctccgattccgttccatgctggagcagcatat
gtgcgaatgcatcccaaacttcataccaccagttttgtggcctcacaaacaggtcaactt
caagtgatagatctcatgaatccaaattcggtcaacttaagacaagctaatgtgtcactg
gtgcttggaattgatctatcaccatccggggaagcattggccatcaacgatgctgaatgc
tccattcacttatggggctcgccgactaaggttcattttaatgaattgagcaaggaaacg
gaatttgccgatgttcctacgcggccttctcaggtagattggtcttccgaatctccattg
aatatggtcgggatgccttattaccacgaacgtctcttttcggcgtggccaagccattta
ctttttgaggttggcagtccgccggctccattggatcagtctatgttaccatatttacgc
cccgcagagataggacaccatgctccaaacccaagaaagactcgtcgatatcaaattgaa
aacactcgcgcattgaccacagcagagccggctcttattgcaccaaagtttttgagtgaa
aaggcccgggattatagcaagtcagacggcttggttggcgatgctgcagaggctttggta
ggggcgaagatcaacggagagagcgatgacgatccattgctcaaatacagcaacgtagag
atcaaatacagccgattcggtgtggatgactttgatttcagattctataacaagacgtct
ttctctggactagagactcacatctccaactcctttaccaattccctccttcagcttttc
aaattcataccactcttccgaaatctagccctaaatcatgcagccgggtcatgcattttt
gaacactgtcttttgtgtgaactgggctatctatttgacatgcttgaaaaggcaagcggg
caaaattgtcaggccaccaaccttctcaagacattcagcagcttccgagaggcctccaat
ctgggcctctttgaagagaatcttaccaacaaatcgctctcaaccgcgatccaagcagtc
aaccgattcttcctgactcaagtagctcaagacttccggacgattcagcctaactcagaa
gagctcgatcagcgcttagccaccattgcgtctgagtctattcggtgcatgttctgccag
aacgaaattgtgcgccctggcaattcacttgccaacgaactgatttacccgaacatcgat
attaaacatgtacgccgcaatcctctattccgcttctccaatatcctacgtgccagtatc
gagcgagagacacaaaaccgaggatggtgcaattattgtcgtcgctaccagcaggtgacc
attcgcaagaccatccaccgcatgcctttaattctcatgctcaatgccgccctgaccaac
cctctctgccgtcggctctgggcaatcccaggatggttgcctgacgccgttggagttctc
gttgatgcgagcggacaggtcatgtgctttgaaggcgatgatcttcgtgtccgaatacaa
aatcaaacacctggcctcgcggtatatgatctgattggcttggtcgcggagattgatatc
ccagaacatcaaaagccccatttggtttctttcgtcaatgtctccatttcaggtgccgag
tctgaagaacaaggcaaatggcacctgttcaatgacttcttggtcacggaggtcgacaga
gatgaagcactccgatttacgcagccttggaaacaaccttccgtgctagcttaccaagtg
agagacccacgccatgtggtcgatgactcttggaagaaagtcctcgataaaaccctgcta
ttccgcgaatggtctttgaatggcggccatcaggttgagtcatgtcaaactctcaccgag
gaggaaatgccacagcccggaacacctgtcgcattggacaccgagtttgttgatctggaa
aaagccgagattgacgtcaaggcagacgggtccaaggaaatggtacgccccaacaagagc
gggctggcccgtgtttccgtcttgcgtggagtgggtgttcatgaaggagctccctttatt
gatgactacatcaccatccgtgagccaattgtggactatgtgacccagtattccggcatc
aagcccggtgacctggatccgcgaaccagtgaacacaatcttgtcccactaaaggttgcc
tacaagaagctttggctgcttctaaacctaggttgtgtattcgttggtcacggtctagcc
tctgatttccgtaaaattaacatccaagtgcccaagacacaaaccgtggatacacagtat
ctcttcttccaccccgggaagaaccggcgtctcagtctcaggtacctggcctgggctgtc
ttcaaggagcatatccaagaggaacccgcacctgacaccttacaaggtcacgattcgatc
gaggacgctcgcatggctttgcgtctctggaaaaaattccaggaatacgaggatgcaggt
attgtctcgcaaatgcttgaagagatcttccgcgaaggctccaagctaggattccgccca
cctcctaagaacggaggcaccatcaccgttctctcccgacctggcaccgctgtcactttg
cagaatgacagcggtcgcaacactcctagcaccccggacacacgatccgtggtgccagtc
gccctaacatcagccgctcccatcgctggaccccccagcgcccctaccacccctcgtcag
gctttcaggcgatcgatggccttgaccccgagtaacgggagcttttctggacctggtacc
ggtgatttctttggaggtagtccacttcgatag
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integrated database retrieval system
