Penicillium digitatum: PDIP_84320
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Entry
PDIP_84320 CDS
T04849
Name
(RefSeq) Exosome complex endonuclease 2/ribosomal RNA processing protein, putative
KO
K03678
exosome complex component RRP45
Organism
pdp
Penicillium digitatum
Pathway
pdp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDIP_84320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_84320
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PDIP_84320
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF7337
Motif
Other DBs
NCBI-GeneID:
26236746
NCBI-ProteinID:
XP_014532588
UniProt:
K9FR95
A0A7T7BHQ4
LinkDB
All DBs
Position
Unknown
AA seq
324 aa
AA seq
DB search
MRPARAKWPKKESNSDPRAGAARPPSTMSKEAQLSIAEREFILEALRENVRLDGRQPDDY
RPLNISFGEEYGHVKLQLGKTNLIVRISAEVTKPREDRPFDGLFNINLELSAMGSPAWEN
GRTNDIEAYATNALDRIIRHSNALDTESLCILKGVSCWSIRADIHIIDYDGNITDAACIA
IMAGLQHFRRPDAVVRDGRVIVYGVEQRVPVALNITHKPLSVTFHTFNESKHVIVDATLK
EEQAAEGDLVIGINSAGDVCYLSKYAGAPADAMVIVNKTNVAWEKVKEINAAVEKVLQAD
LAKRAKIGMADESRAENDRPVQIE
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgcggcctgcacgggcaaaatggcccaaaaaagaaagcaactctgatccccgcgccggg
gctgctagacctccctcaacgatgtcgaaagaagcgcaactgtcaatcgcagagcgtgaa
tttattctcgaggcgctccgtgagaatgtgcgtctcgatggtcgccagcctgacgactat
cgtcctctgaacatctcctttggtgaagaatatggacatgtgaagctgcagcttgggaag
acgaaccttattgttcgcatttctgctgaggttactaagccgcgtgaagatcgacccttc
gacggtctcttcaacatcaacctggagctgagtgcaatgggttcaccggcctgggaaaac
ggacgaaccaatgacatcgaggcatacgccactaacgcccttgaccgtatcatccgtcat
tccaacgccctcgatactgaatctttgtgcattctaaagggcgtgagctgctggtcgatc
cgggccgacattcacattatcgattacgatggaaacattaccgatgcggcctgcattgcg
atcatggctggactgcaacacttccgccggccggatgccgtggtgagagatggccgtgtc
atagtctacggcgtggagcagcgtgtacccgtcgcacttaacatcacgcacaagcctctc
tcagtcacattccacaccttcaatgaaagcaaacatgtcattgttgatgccaccctcaag
gaggaacaggctgctgagggagatcttgttattggcattaacagtgcaggtgatgtctgc
tacctctcaaagtacgctggtgcaccggccgatgctatggtaattgtgaacaagacaaat
gtggcatgggaaaaagtcaaagagatcaatgctgctgttgagaaggttctacaggccgac
ctggctaagcgggcgaagattggcatggccgatgaatctcgggcagaaaatgaccggccg
gttcaaatcgaataa
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