KEGG   Penicillium digitatum: PDIP_85950
Entry
PDIP_85950        CDS       T04849                                 
Name
(RefSeq) WD repeat-containing protein
  KO
K12880  THO complex subunit 3
Organism
pdp  Penicillium digitatum
Pathway
pdp03013  Nucleocytoplasmic transport
pdp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pdp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PDIP_85950
  09122 Translation
   03013 Nucleocytoplasmic transport
    PDIP_85950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pdp03019]
    PDIP_85950
   03041 Spliceosome [BR:pdp03041]
    PDIP_85950
Messenger RNA biogenesis [BR:pdp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     PDIP_85950
Spliceosome [BR:pdp03041]
 Complex C
  Other components
   EJC/TREX
    PDIP_85950
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    PDIP_85950
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40 Beta-prop_WDR5 WD40_CDC20-Fz Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd ANAPC4_WD40 WD40_Gbeta Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_TEP1_2nd WDR55 Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_CAF1B_HIR1 WDR90_beta-prop_4th Cytochrom_D1 Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Tricorn_2nd Beta-prop_EML DSE1_N Beta-prop_SCAP Beta-prop_WDR36-Utp21_1st eIF2A Beta-prop_HPS5 Beta-prop_ACSF4 CFAP251_N Beta-prop_NOL10_N WD40_RFWD3 Beta-prop_WDR41 PAC11 ASA1 Beta-prop_SPT8 PALB2_WD40
Other DBs
NCBI-GeneID: 26236909
NCBI-ProteinID: XP_014530644
LinkDB
Position
Unknown
AA seq 445 aa
MAVTPDKDSLAVSAFPKAVSEYSPIRSVHRSSDSIKPKLLDPITSTTTITSAASLNAGNR
LVLRQLLEEVDEEMAPASRRELLHKDHFAFVFGSLKTQNYLDPVSKGPGSHTIRTLAWNP
TGQLIATGSADRTLRIWNPERPHVRYSTELRGHTAGIEKALFNPVRDAELASCSADGTVR
FWDVRSKTCVSRLDVGGEAFTLSWSADGSTMIVGKKDDTLIPVSVQFPSSPTTHPDGVNA
LNLPSSTPGATTYTALDPHPQTVQTNATTFSWCMPTPERPEQQVFVTTGEGKVKIMSYPS
FDIMHTLNAHTSACLSIALAPTGRYLAVGGSDALISLWDTTDWICRRTLSSENGGAIRGV
SWSFDGRYIVGACDELGCGGNGLEIFHAESGDSIYTIPTAGINAGVSAVAWHPSRYWLAY
STTTDGPGSSSAGGLKIVGAAGGGL
NT seq 1338 nt   +upstreamnt  +downstreamnt
atggcggtaacacccgataaggattccctggcagtatcggccttccctaaggcggtatct
gagtactctccaattcggtcggtccatcgttcttcggatagcatcaagcctaagctgcta
gatcctatcacttctactactactatcacttctgccgccagtttgaatgcaggtaaccgt
ctagtcttgcgccaattgctagaggaggtagacgaagagatggcgcccgcttcgcgtcgc
gagctcctacacaaggatcactttgcattcgtgtttgggagcttaaagacgcaaaactac
ttagatcctgtttccaagggaccagggtctcacacgatccgcactcttgcctggaacccc
acgggccagctgattgcgactggctcggcagatcgcactctacgaatctggaatcccgaa
cgtcctcatgtacgatactctaccgaattgcgtggccacacagctggtatcgagaaggct
cttttcaacccggtccgcgatgcggagctggctagttgctcggccgatggtacagtgcgc
ttctgggatgtgcgctccaagacatgtgtgagccgtctcgatgttggtggcgaagcattc
acactatcctggtctgctgatggcagcacaatgattgtcggcaagaaggacgatacctta
atccccgtctccgttcaattcccgtcctctcctactacccaccccgatggcgtcaatgct
ctgaaccttccatcctctacacccggcgcaaccacgtacacagctctcgaccctcaccct
cagaccgtccaaacaaatgcaacaaccttctcctggtgcatgccgacccccgaacgtccg
gagcagcaagtattcgtgacgaccggcgaaggcaaggtcaaaatcatgtcctacccttcc
ttcgacattatgcacactctcaacgcccacacctcagcctgcctttcaattgcgctcgcc
ccgacaggccgataccttgcagttggcgggagcgacgctctcatctccctctgggacaca
actgactggatttgccgtcgtactttgtctagcgagaacggtggcgctatccgtggcgtg
agctggagcttcgatggtcgctacatcgtgggcgcatgtgacgagcttggatgtggtggg
aatggactggagatcttccatgctgagtctggtgatagcatttacacaattcctactgcc
ggcatcaatgctggtgtctctgctgttgcgtggcatccctctcgctattggctggcttac
tcgactaccactgatggacctggtagctctagtgctggaggcttgaagattgtcggtgct
gctggtggtggcctgtaa

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