Polynucleobacter duraquae: CL55_00005190
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Entry
CL55_00005190 CDS
T04207
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pdq
Polynucleobacter duraquae
Pathway
pdq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CL55_00005190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdq03019
]
CL55_00005190
Enzymes [BR:
pdq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CL55_00005190
Messenger RNA biogenesis [BR:
pdq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CL55_00005190
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKD24852
UniProt:
A0A0E3ZKX0
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All DBs
Position
489645..491063
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AA seq
472 aa
AA seq
DB search
MINTVPEINSSTGATKSGATPATITFADFGLDPKIQKAVSEQGYNTPTPIQAQAIPHVLA
GSDLMGAAQTGTGKTAAFVLPIIQKILRHASSSASPARHPIRALVLTPTRELAVQVAENA
ASYSKHTDLRAAVVYGGVDMKEQVAILRGGVEILIATPGRLLDHIGSKVANLSQVEILVL
DEADRMLDMGFLPDLQRIIDLIPAQRQTLLFSATFSPEIKKLAQSYLRTPVTVEVARQNA
AADTVKQVVHMVASADKQQAIVKVLEARTRQGLSRQCIIFTNSRLGCARLARSLERDGIK
AGAIHGDKSQGERTLTLDAFKSGAIEALVATDVAARGLDIPSMPCVINHELPFNAEDFIH
RIGRTGRAGSKGDAIALVDASEKRLLDDIEKLMKRKLDIQPLPEGSSRPAPSRNSSRSDA
PAKMSDPFFYKPYEPTAVVKPASEAVNPTEKKVGIIPAKPAVGALLGGFKKK
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
ttgataaatactgttcctgaaataaattcctctaccggcgccactaagagtggcgccacc
ccagcaacaattacctttgctgactttggcttagatccaaagattcaaaaagcggtatct
gagcagggttacaacactccaactccgattcaagcgcaagccattccgcacgttttggcg
ggaagcgatttgatgggcgcggcgcaaacgggtaccggtaaaacggctgcttttgtactg
cccatcattcaaaagattctgcgtcatgcaagtagcagtgcttcgcctgctcgccatccg
atccgtgctttagtattaacgccaacacgcgagctagcggttcaggttgctgagaacgca
gcgagttattccaagcacaccgatttgcgtgctgccgtggtttacggtggcgtggatatg
aaagagcaggtggccatactgcgtggtggtgtagagattttgattgctactccgggacgc
ttgctggatcacataggctctaaagtagccaacctgtctcaagtagaaattctggtgcta
gacgaagccgatcgcatgctcgatatgggcttcttgcctgacttacagcgcatcattgat
ttgattccagctcagcgccaaactctcttgttctcagcgacgttttcaccagagattaaa
aagttggcacaaagttatttgcgtacgccggtgactgttgaagtggcgcgccaaaatgcc
gcggcagatactgttaagcaagtagttcatatggtggctagtgctgataagcaacaggca
attgtgaaagtacttgaagcgcgtactcgtcaaggcctatctcgtcagtgcatcatcttt
accaacagtcgtttaggttgtgcaaggctagctcgctcattggagcgtgatggtatcaag
gctggcgcgattcatggtgataagagtcagggtgagcgcactctcactttagatgccttt
aagtctggagcgatcgaggccttagttgcaaccgatgtagccgctcgcggtctggatatt
ccatcgatgccttgcgtgattaatcacgagttgccatttaatgctgaagattttatacac
cgtattggccgtacaggtcgcgctggtagtaagggcgatgcaattgcattggttgatgcc
agtgaaaaacgtttactcgacgatattgaaaagttgatgaagcgcaagttggatattcag
ccattgcctgagggcagctcacgccccgcacccagcagaaattcgtcgagatcagatgca
ccagcaaaaatgtcagatccatttttctataagccttatgagcctactgctgtagtcaag
ccagcatcagaggctgttaatcctactgagaaaaaagtcggcatcattccagcaaaacca
gcagtcggcgctttacttggcggctttaagaaaaagtaa
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