Polynucleobacter duraquae: CL55_00005210
Help
Entry
CL55_00005210 CDS
T04207
Name
(GenBank) DNA-directed DNA polymerase III (polc)
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pdq
Polynucleobacter duraquae
Pathway
pdq03030
DNA replication
pdq03430
Mismatch repair
pdq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CL55_00005210
03430 Mismatch repair
CL55_00005210
03440 Homologous recombination
CL55_00005210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdq03032
]
CL55_00005210
03400 DNA repair and recombination proteins [BR:
pdq03400
]
CL55_00005210
Enzymes [BR:
pdq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CL55_00005210
DNA replication proteins [BR:
pdq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CL55_00005210
DNA repair and recombination proteins [BR:
pdq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CL55_00005210
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AKD24854
UniProt:
A0A0E3V002
LinkDB
All DBs
Position
492019..495645
Genome browser
AA seq
1208 aa
AA seq
DB search
MASPRFVHLRVHSEFSITDGVVRIDDAVAAAEKDGMGALALTDLSNLFGLVRFYSAARSG
GIKPIAGADVWVSNPQDPDQPHRLLLLVQNHSGYLNLCQLLSKASLENQSRGRAEVDLNW
FSEPASKAEDKAAKRTLSYGLIALSGGRWGDVGAALLAGQEDLAKVATKRWASLFPNAFY
IEVQRGGHPQDEQQLQLACHLASEMDLPIVATHPVQFMQRSDFIAHEARVCIAEGELLGN
PRRTKKFNEEQYFLSQEEMEKRFADLPVALANSVEIAKRCNLSLTLGQPRLPDFPTPPGI
TLDDYLLQQSEIGLKRHMVRNFPDAEERAKEEVRYHERLVFEVKTIAQMGFPGYFLIVAD
FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF
CQHGRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQGYNFVDGIAKLIPNK
PGQYMTIEIAKKEEKQLGEREKNEDEVRQLLSLAQQLEGMTRNVGMHAGGVLIAPGRLTD
FCPLYTQEAKDSKDQESGSVISQFDKDDVEAIGLVKFDFLGLTTLTILAAAEKWIKTLHT
DRKDWNIGEILLDDQKAFEVLKNANTVAVFQLESRGMQGMLREAKPDRFEDIIALVALYR
PGPMDLIPDFIERKHGRQKVEYPDPRIEPVLQETYGIMVYQEQVMQMAQMIGGYSLGGAD
MLRRAMGKKKPEEMAQHRKIFSDGAKAGGITEGKANEIYDLMERFAGYGFNKSHAAAYAL
LAYQTAWLKAYYPAEFMAANLSLAMDDTDKVKILYDDCLANHIRVFSPDINTGVYVFTPL
RAPDAAPDSPISHIRYGLGAVRGTGEAAIEVIVKAREAGGPFKDLFDFCARVDRRQVNRR
AIEALMRAGAFDSLYKDSISAGGNLYDIRSTLLASLARAIEAAEQAEASINQVSLFEMAG
EDDRHLPELVRELPWSEKKRLQDEKSALGLCLTGHMFDAYRDETAHFIRQPLVKVTEGKD
QLIAGIITSARMLTGQRGRMMIATIDDGTAAIEVTLYSEVYEPNRSWLKEDELLVAKVNI
TPDKFSGGVRIVSEAVMDITGARMRFARNLHLSIDSAIDLKSLRSQIGPYLMSNRVRDPK
LGPAVASMPSASEGMKGLMLTAAVTTSGGACLMQFPEELRIYPDDACLHSLNQILAAKQS
NTVQVQYL
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaccccgttttgttcatctacgcgtccattccgagttttcgattacggatggc
gttgttcgcattgacgatgcggtagctgccgctgaaaaagacggtatgggcgccttggct
ctcactgacttaagtaatttatttggcctagttcgtttttatagtgctgcacgctctggc
ggaattaagccaatcgcaggcgcggatgtttgggtgagcaatccccaagacccagatcaa
cctcatcgtttattactcctggtacaaaatcactctggctacctcaatctatgccagctc
ttaagtaaggcctcccttgagaatcaatcccgaggtcgagctgaggtcgatctcaactgg
tttagcgaaccagcttcaaaggctgaagataaagctgcaaaaagaacgctgtcttatgga
ttgattgcgctttcaggtggacgctggggtgatgttggtgctgctctcctggctggtcaa
gaagatttagcgaaagttgctaccaagcgttgggcgagcttatttccaaatgctttttac
attgaagtgcagcgcggcggtcatcctcaggatgagcagcaacttcagttggcttgccac
cttgctagtgaaatggatttaccaattgttgctacgcatccagtgcagtttatgcagcgt
agtgatttcatagcccatgaggcccgagtctgtattgcagaaggcgagcttttaggtaat
cctcgtcgcaccaagaaatttaatgaagagcagtattttttatctcaagaggagatggaa
aagcgctttgcagatttaccagttgcacttgcaaactccgtggagattgccaagcgctgc
aacctctctttgactttaggtcagccgcgtttgccggattttccaacgccaccaggtatt
acgctcgacgattatttattgcagcaatcagagattggtctgaagcgccatatggtgcgc
aattttcctgacgcagaggagcgcgctaaggaagaggtccggtatcacgagcgcttggtg
ttcgaggtaaagacaattgctcaaatgggtttcccaggctacttcttaattgttgctgac
tttattaactgggcaaaaaataatggcgtaccagttggccccggtcgtggatctggtgct
ggctctttggtagcctattcattgggaattactgatcttgacccgttgcgttacaacctc
ctttttgagcgcttcttaaatcctgaacgggtatcgatgcccgacttcgatattgacttt
tgccagcatgggcgcgatcgcgtgattcagtacgtaaaagataaatatggaaaagatgca
gttagtcaaattgctacctttggaacaatggctgcacgcgcagcaattcgtgacgttggt
cgtgtgctcgagcaaggctataacttcgttgacggtatcgcaaaattgattccgaacaag
ccaggtcagtacatgactattgaaatagccaagaaggaagagaagcaattaggcgagcgt
gaaaagaatgaagatgaagtgcgtcaactgttatctctagcgcagcagttagagggtatg
actcgtaacgtgggcatgcatgcgggtggtgtattaattgcgcctggtcgtttaaccgat
ttttgcccgctctatacgcaagaggcgaaagactccaaagaccaagagagtggttcagtc
attagtcagtttgataaagatgacgtagaggcgattggtctagtgaagttcgactttcta
ggtttaaccaccttaacaattttggcagctgctgagaaatggattaaaacgctacatacc
gatcgtaaagattggaatatcggtgaaattctgcttgatgatcaaaaggcttttgaagtt
ttaaagaatgccaatacggtcgctgtcttccagttagaaagtcgtggcatgcaaggcatg
ctgcgtgaagctaagcctgaccgcttcgaagatattattgcgctcgtcgcgctctatcgc
cctggtccaatggatctgatcccggactttattgaacgtaagcacgggcggcaaaaagta
gagtatccggatcctcgcattgagcccgttctgcaagaaacctacggcatcatggtctac
caagagcaggtgatgcagatggcgcagatgattggcggctactcactcggtggcgcagac
atgttgcgtcgtgcgatgggtaagaagaagcctgaagagatggcgcagcatcgcaagatt
tttagtgatggcgcaaaagcaggcggtattactgaaggtaaagccaacgagatttatgac
ttgatggagcgttttgcaggctatggatttaataaatcccacgctgctgcttatgcgctc
ttggcatatcaaactgcctggctaaaagcctactaccccgctgaatttatggcggccaac
ttatcgctcgcaatggatgacaccgataaggtgaagattctgtatgacgattgtttggca
aatcatattcgcgtgttttcaccagacattaatactggtgtgtatgttttcacgccatta
cgtgcgccagatgctgccccagattccccgattagtcatattcgttatggtttaggtgcg
gttaggggaactggtgaagcggcaattgaagtgattgtgaaggcgcgtgaggctggcggt
ccattcaaggatctgtttgacttctgcgcacgcgttgatcgtagacaggtgaaccgtaga
gcgattgaggctttaatgcgtgctggcgcctttgatagcttgtataaggactccatttcc
gctggtggcaatctttacgatattcgatctactttattggcttctcttgcgcgtgcaatt
gaggctgccgaacaagctgaagcctcaattaatcaagtgagtttatttgagatggcagga
gaagatgatcgtcatttgccagagttagttcgcgaattaccatggtctgaaaagaaacgt
ctccaagatgaaaagagcgctttaggactttgtttaactggccacatgtttgacgcctat
cgtgacgagacggcgcattttattcgccagccattagtcaaggtgactgagggtaaagac
cagttaatcgccggcattattacttctgctcggatgctgactgggcagcgtggacgcatg
atgattgcaactattgatgatggcactgctgcgattgaagtgacgctctacagcgaagtc
tatgaacccaatcgttcttggctcaaagaagatgagttgctggtggccaaagtcaatatc
actccggataagttttctggtggagtgagaatcgtttctgaggcggtcatggatattacg
ggagcccgtatgcgttttgcacgcaaccttcatctatccatcgattcagcaattgatctc
aaatccttacgtagccaaattggaccttacttgatgagtaaccgggtacgcgatcctaag
ctaggtcctgcggtagcttctatgccaagcgctagcgaaggcatgaagggtttaatgctt
actgctgcagtcaccactagtggtggagcctgtctgatgcaatttccggaagagctccga
atttatccagatgacgcttgcttacatagtttgaatcaaattttggcagccaagcaatct
aatactgttcaagttcagtacctctaa
DBGET
integrated database retrieval system
