Polynucleobacter duraquae: CL55_00007510
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Entry
CL55_00007510 CDS
T04207
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pdq
Polynucleobacter duraquae
Pathway
pdq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CL55_00007510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdq03019
]
CL55_00007510
03016 Transfer RNA biogenesis [BR:
pdq03016
]
CL55_00007510
Enzymes [BR:
pdq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CL55_00007510
Messenger RNA biogenesis [BR:
pdq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CL55_00007510
Transfer RNA biogenesis [BR:
pdq03016
]
Prokaryotic type
tRNA degradation factors
CL55_00007510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KhpA-B_KH
KH_2
Motif
Other DBs
NCBI-ProteinID:
AKD25084
UniProt:
A0A0E3V099
LinkDB
All DBs
Position
734949..737114
Genome browser
AA seq
721 aa
AA seq
DB search
MTMFKKAVKTFQWGNHQVTMETGEIARQAGGAVIVNVDDTVVMGTVVASKSAKPGQSFFP
LTVDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVVHVL
SINPDVPADIPALIAASAALAVSGIPFAGPVGAARVGYANGQYLLNPTRTEQATSEMDLI
VAGTQAAVLMVESEANQLSEEIMLGAVVYGHDQMQTAINAINELVTEAGKPEWDWTAAPK
DEPFIAKVTALAEAPLREAYQIRQKGARSDKLKEITKTVVAKLQEEGDVDAVAVNDILFE
IEAKIVRSQILNGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTA
RDEQIIDALEGEYRDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSAE
DFAYSIRVVSEITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAVLT
DILGDEDHLGDMDFKVAGTANGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQE
AMGSVRTELSAHAPRMVSFKIHPDKIREVIGKGGATIQALTKETGCSIDIKDDGTVTIAS
TSAEGMAEAKARIEGITAEAEVGKIYEGPVVKLLEFGALVNILPGKDGLLHISEISNERV
KEVKDYLAEGQLVRVKLLAADERGRLRLSLKAAMADEGGTIAPLAGATEASDAAPASGEN
A
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgactatgtttaaaaaagcagtaaagacgtttcaatggggtaaccatcaagtaacaatg
gaaacaggcgagattgctcgtcaagctggtggtgctgtcatcgttaacgtggatgacaca
gtagtaatgggtaccgtagttgcctctaaatctgctaagccaggccaatcatttttccca
ttgactgttgattacctcgagaaaacttacgcagcaggaaaaattcctggcggtttcttc
cgtcgtgaaggtcgtccatcagaaggcgagacattgatctcccgcttgatcgatcgtcca
ttgcgtccgctgttcccagaaggcttcttgaacgaagtccaagtagtggttcatgtgttg
tctatcaacccagacgttcctgctgatatccctgcattgattgctgcttctgcagcatta
gctgtttcaggtatcccatttgctggcccagttggcgcggcacgtgttggttacgctaac
ggtcaatacctcttgaacccgactcgtacagagcaagctactagcgaaatggatttgatt
gttgctggtacacaagcagctgtattgatggtggagtcagaggctaatcagttgtctgaa
gagatcatgttgggtgcagttgtatatggtcacgaccaaatgcaaactgcgatcaatgca
attaacgaattggtaaccgaagctggcaagccagagtgggattggactgccgctcctaaa
gatgagccattcattgctaaggtcactgcattggctgaagcgccattgcgcgaggcttat
cagattcgtcaaaagggcgctcgttcagacaagcttaaagaaattactaaaacagtggta
gctaagttacaagaggaaggtgatgttgacgctgttgccgttaacgacatcttgtttgaa
attgaagccaagattgtgcgtagccaaatcttgaatggcgagccacgtattgatggtcgt
gatacacgtaccgttcgtccgatcgaaattcgtaatggtgtattaccgcgcacacacgga
tctgcattgtttacccgtggtgaaacacaggctctcgtagtggctactttaggtactgca
cgtgatgagcaaattatcgacgcgctcgaaggcgagtaccgtgatcgcttcatgttccac
tacaacatgcctccgttcgctactggcgaaacaggtcgtgtaggtagccctaagcgtcgt
gaaattggtcacggtcgtttagctaaacgtgcattgattccagtattgccaagcgcagaa
gattttgcctatagcattcgtgtagtttcagaaatcactgagtccaatggctcttcatcc
atggcttctgtttgtggcggctgtttggcaatgatggacgctggtgttccagtgaaagct
cacgttgctggtgttgcaatgggcttgattttggatggcaaccgttttgctgtgttgacc
gatatcttgggtgatgaagatcacttgggcgatatggactttaaagtagcaggtactgct
aacggcattactgctttgcaaatggacattaaagttcagggtattactaaagaaattatg
caagttgcattggctcaagctaaagaaggtcgtttgcacattttgagcaagatgcaagaa
gcaatgggttcagttcgcactgaattgtctgcacatgctccacgtatggtttctttcaag
attcatccagataagattcgtgaagtgatcggtaagggcggcgcaacaattcaagccttg
accaaagagactggttgtagcatcgacattaaagatgatggcaccgtaacaatcgcctct
acttctgctgaaggcatggctgaagcaaaagcacgtatcgaaggtattactgctgaagcc
gaggtaggtaagatttacgaaggcccagttgtgaagttgctcgagttcggtgctttagta
aatattcttccaggcaaagacggtcttttacatatctcagaaatttctaatgagcgtgta
aaagaagttaaagactatttagcagaaggccaattagtgcgcgtgaagttgttagctgcg
gatgagcgcggtcgtttgcgtttatctcttaaggccgcgatggctgatgagggcggcacg
attgctcctttagctggcgctactgaagcctctgatgcagcccctgcatctggcgaaaac
gcttaa
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