Polynucleobacter duraquae: CL55_00014620
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Entry
CL55_00014620 CDS
T04207
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
pdq
Polynucleobacter duraquae
Pathway
pdq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CL55_00014620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdq03400
]
CL55_00014620
DNA repair and recombination proteins [BR:
pdq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CL55_00014620
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CL55_00014620
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_30
Kinesin
UB2H
FlaG
Motif
Other DBs
NCBI-ProteinID:
AKD25795
UniProt:
A0A0E3ZMJ7
LinkDB
All DBs
Position
complement(1425823..1427976)
Genome browser
AA seq
717 aa
AA seq
DB search
MIAEMPPKLPKTSSNSPVAESKKTPVADPLGEVGHDLNPAKFVSFPDSPFQLYQPFPPAG
DQPAAIDALVAGIEDGLTFQTLLGVTGSGKTFTMANVIAITGRPAIIFAPNKTLAAQLYS
EFREFFPKNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRLSATKSLLERRD
VIIVATVSAIYGIGNPGDYHSMVMTLRPGDKMSQRDILMRLIAMQYDRNETDFKRGVFRV
RGDTIDIFPAEHNELAVRVELFDDVIESLQFFDPLTGKIRQKIPRFTVYPSSHYVTPRDT
VLKAIETIKAELRIRLDEFVKDGKLVEAQRLEQRTRFDLEMLNELGFCKGIENYSRHLSG
AMPGEAPPTLVDYLPNDALMFLDESHVLIGQLNAMYNGDKSRKHTLVEFGFRLPSAMDNR
PLKFTEFETKMRQTVFVSATPADYENTHTGQVVEQVARPTGLVDPEIEVLPASTQVDDLL
NQIHERVKVHERVLVTVLTKRMAEQLTDYLSDNGVKVRYVHSDIDTVERVEILRDLRLGV
FDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADR
ITDSMKRAMGETERRRTKQIAFNKANGIEPRGVKKRIKDIIDGVYDVKEKRSEMQVEQER
ARYEDMSEKDLAGEIKRLEKQMNSEAKNLEFEKAASTRDRLTKVKEMAFGARSRDAI
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgatagctgagatgccccccaagttgcctaaaacttcctcgaattccccagttgccgaa
agcaagaaaacccctgtagccgatcctttgggcgaggtaggccacgatttaaacccagct
aaattcgtttccttcccagattccccgtttcagctctatcagccatttccgcccgcaggc
gatcagccggccgcaattgatgcgttagtggctggtattgaggatgggttgacctttcag
acgctgttgggcgtgactggctcgggtaagaccttcactatggctaatgtgattgccata
acaggtcgtcccgccatcatttttgccccaaacaagaccctagctgcccagctctatagt
gagtttcgggaattcttccctaaaaatgcggtggagtactttgttagttactacgattac
taccagccggaggcctacgttccgacacgcgatttgtttattgaaaaggattcatcaatc
aatgagcatatcgagcaaatgcgactgtctgctaccaagagtttattagagcgacgagat
gtcatcatcgtagcaaccgtatccgcaatttacggtattggtaatccaggcgactatcac
agcatggtgatgactttacgtcctggcgacaagatgagtcagcgcgatattttgatgcgc
ttaattgcgatgcaatacgatcgcaatgaaaccgactttaagcgtggtgttttccgagtt
cggggcgacacgattgatatttttccggctgagcataatgaattagccgtacgcgttgag
ctcttcgatgatgttatcgagagcttgcaattctttgatccactcactggaaaaattcgt
cagaagattccacgctttaccgtttatccaagctcgcactacgtcacgccgcgtgatacg
gttctcaaagcaattgaaacgatcaaagcagagttacgcattcgcttagatgaatttgta
aaagacggtaagctggttgaagcgcagcgtttagagcagcgtacccgctttgacctagag
atgctcaacgaattaggcttctgcaaaggcattgagaactattcccgccacctctcaggc
gctatgcctggtgaggcgccgcctaccttggtcgactacctgcccaatgatgcactcatg
tttttagatgagagtcatgtcctcatcggtcagctcaatgcgatgtacaacggcgacaag
tctcgcaaacataccttagtagagtttggattccgcttgccttcagcaatggataaccgc
ccactcaaatttactgagtttgaaaccaaaatgcgtcaaaccgtctttgtttctgcaaca
ccggctgattatgaaaatacgcacaccggacaagtggtagagcaagtagcaagaccaacc
ggattggtcgacccagaaattgaagtattgccagcaagtactcaggtagatgatttgctg
aatcagattcatgagcgagtcaaagtccatgagcgtgttttagtaacggtattaacaaaa
cgtatggctgagcaactcacggattacttatcggataacggagtaaaggtacgctacgta
cactccgatattgatacggtggagagagtggaaattctgcgtgacttacgtttaggtgtc
tttgacgtattggtaggtattaatttattacgcgagggcctagatattccagaggtctct
ctagtcgccattttggatgcagataaagagggcttcttgcgttctgagcgcagtttgatt
caaaccattggtagagcggcacgaaacgtcaaaggtaaggcgattttgtatgccgaccgt
attaccgactccatgaagcgggcgatgggcgaaacggagcgtcgccgtaccaaacaaatt
gccttcaataaggctaatgggattgagccccgtggcgttaaaaagcgcattaaagacatt
attgacggggtctatgacgtcaaagagaagcgctctgagatgcaagttgagcaggagcgg
gcacgctatgaggatatgagcgagaaggacctggcgggcgaaatcaagcgtttagagaag
caaatgaactctgaggccaagaatttggagtttgaaaaggccgcctctacccgcgacaga
ttgactaaggtgaaggaaatggcgtttggggctcgttcccgggacgccatttag
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