Pseudomonas sp. ATCC 13867: H681_02205
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Entry
H681_02205 CDS
T02524
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pdr
Pseudomonas sp. ATCC 13867
Pathway
pdr02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pdr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
H681_02205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdr03021
]
H681_02205
Transcription machinery [BR:
pdr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H681_02205
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
PhyR_sigma-like
Rv2175c_wHTH
MerR
HTH_17
HTH_24
HTH_29
Sigma70_r3
HTH_11
Motif
Other DBs
NCBI-ProteinID:
AGI22323
LinkDB
All DBs
Position
complement(485380..485898)
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AA seq
172 aa
AA seq
DB search
MSAIQIGNGERVGALYRDHRDWLTAWLNRSLGCVQRAEDLSQDTFVRVLGRRELPSLREP
RAFLVTVAKGLLVDHWRRMALEQAYLEELQHLPEAVQPSAEEHCLILADLREIDRLLGNL
SARARSAFLLNRLDGLGHAEIAEQLGVSVPRVRQYIAQGLRQCYIALYGTPT
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggccatccagattggcaatggcgaacgcgtgggtgcactgtaccgcgatcatcgc
gactggctgaccgcctggctcaaccgcagcctgggctgcgtgcagcgcgcggaagacctg
agccaggacaccttcgtccgcgtgctcggccgccgcgaactgccgtccctgcgcgaaccc
cgcgccttcctggtgaccgtcgccaagggcctgctggtggaccactggcgccggatggcg
ctggaacaggcctatctggaggaactgcagcacctgcccgaggccgtgcagccctcggcg
gaagagcactgcctgatcctcgccgacctgcgcgaaatcgatcgcctgctgggcaacctg
tccgctcgcgcgcgcagcgccttcctgctcaaccgcctggacggtctcggtcacgccgag
atcgccgaacagctcggcgtctccgtgccccgcgtacgccagtacattgcccagggcctg
cgccagtgctacatcgccctctacggaacgccgacgtga
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integrated database retrieval system