Pseudomonas sp. ATCC 13867: H681_03635
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Entry
H681_03635 CDS
T02524
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pdr
Pseudomonas sp. ATCC 13867
Pathway
pdr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H681_03635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdr03019
]
H681_03635
Enzymes [BR:
pdr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H681_03635
Messenger RNA biogenesis [BR:
pdr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H681_03635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AGI22609
LinkDB
All DBs
Position
781847..783223
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AA seq
458 aa
AA seq
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MTFATLGLIDPLLRALDGLGYQNPTAVQAQAIPAVLKGRDLLAAAQTGTGKTAGFALPLL
QKLLQEGPQVAANSIRALVLVPTRELAEQVHESFRAYGQHVPLRTAVAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLYRQNALKFTQLQALVLDEADRMLDLGFARELDEVFAALPRRR
QTLLFSATFSDAIRQMARTLLLDPLTIDVAPRNTAAKTVKQHLLTVDKKRKAELFLHLLR
EQGWRQALVFAKTRKGVDELVDLLQREGIRADSIHGDKPQPSRLRALARFKAGEVDFLVA
TDVAARGLDIEEMPLVVNFDLPIVPEDYVHRIGRTGRAGASGQAISLVCADEVQQLAAIE
TLIGQTLQRQEEDGFEAEHRVPVTAPGGQVMKKPKKPKQPKVPEGKPGKVHLGALLDDKP
QVKAVRKAPGFGLGGSRPSAGKPGGAGKPAGKRKPGNR
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcgccaccctcggcctgatcgaccctctcctgcgcgccctcgacgggctcggc
taccagaacccgacggcggtccaggcccaggccatccccgcggtgctcaagggtcgcgac
ctgctcgccgccgcccagaccggcaccggcaagaccgccggtttcgccctgccgctgttg
cagaagctgctgcaggaaggcccgcaggtggccgccaattccatccgcgcgctggtgctg
gtgccgacccgcgagctggccgagcaggtgcacgagagcttccgcgcctatggccagcac
gtgccgctgcgcaccgccgtggcgtatggcggggtcagcatcaacccgcagatgatgaag
ctgcgcaagggcgtcgacgtgctggtggccacccccggccgcctgctcgacctgtaccgg
cagaacgccctgaaattcacccagttgcaggccctggtgctggacgaagccgaccgcatg
ctcgacctcggtttcgcccgcgagctggacgaagtcttcgccgcgctgcccaggcgccgg
cagaccctgctgttctccgcgaccttctccgacgccatccgccagatggcccgcaccctg
ctgctcgacccgctgaccatcgacgtggcgccgcgcaacacggcggcgaagacggtgaag
cagcacctgctcaccgtggacaagaagcgcaaggccgagctgttcctgcacctgctgcgc
gagcagggctggcgccaggcgctggtgttcgccaagacccgcaagggcgtcgacgaactg
gtcgacctgctgcagcgcgaaggcatccgcgccgactcgatccacggcgacaagccgcag
ccctcgcgtctgcgcgccctggcgcggttcaaggccggcgaggtggacttcctcgtcgcc
accgacgtcgccgcgcgcggcctggacatcgaggaaatgccgctggtggtcaacttcgac
ctgcccatcgtccccgaggattacgtgcaccgcatcggccggaccggccgcgccggtgcc
agcggtcaggcgatctcgctggtctgcgccgatgaagtgcagcagctggcggccatcgag
acgctgatcggccagaccctgcagcgccaggaagaagatggcttcgaggcggagcaccgg
gtgcccgtcaccgcgcccggcggccaggtgatgaagaagccgaagaagcccaagcaaccc
aaggtgcccgagggcaagccgggcaaggtccatctcggcgcgctgctggacgacaagccg
caggtcaaggcggtgcgcaaggcgccgggcttcggcctgggcggcagcaggccgtcggcc
ggaaaacccggcggcgcaggcaagccggccgggaagaggaaaccgggcaaccgctga
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