Pseudomonas sp. ATCC 13867: H681_07980
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Entry
H681_07980 CDS
T02524
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pdr
Pseudomonas sp. ATCC 13867
Brite
KEGG Orthology (KO) [BR:
pdr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pdr03016
]
H681_07980
Enzymes [BR:
pdr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
H681_07980
Transfer RNA biogenesis [BR:
pdr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
H681_07980
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Peptidase_M24_C
Motif
Other DBs
NCBI-ProteinID:
AGI23472
UniProt:
M4WXJ8
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All DBs
Position
1736888..1738027
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AA seq
379 aa
AA seq
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MFVTALDIQWIRDDASLERKCRDWKELPYLALDTEFMRVDTFYPEAGLVQVGDGSGVWLI
DPLLIRDWSPFAAVLESPLVVKVFHACGEDLEVFQRLTGSLPQPLFDTQLAAAYLGMPHS
MGYSKLVLEILGIDLPKDETRSDWLQRPLTDMQVRYAAEDVQHLAEVYVKLAPRLSDEKL
QWLLADGTDLTNNQSRVSDPQEAYLDVKLAWKLNRLQLAVLRELCVWREEQARLRNKPRN
HVLREHTLWPLARFQPADKVALARIDDMHPRTVRQDGDTLIALIAHAARLPEAVHPETLP
EPLPREVTPVLKKLREVGQKEAERLNMAPELMLRKKVLEALLKTGWPNGPYQLPESLQGW
RRELMGQALLDSLAVQLTE
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgttcgtgaccgctctcgatattcagtggattcgcgacgatgccagcctcgagcgcaag
tgccgggactggaaagaactgccgtacctcgcgctcgataccgagttcatgcgtgtcgat
accttctatcccgaagccggtctggtgcaggtgggcgatggcagcggcgtgtggctgatc
gacccgctgctgatccgcgactggtcgccgttcgcagccgtgctggagtcgccgctggtg
gtcaaggtattccatgcctgcggcgaggacctggaagtcttccagcgcctgaccggcagc
ctgccgcagccgctgttcgacacccagttggccgccgcctacctgggcatgccgcactcg
atgggctattcgaagctggtgctggagatcctcgggatcgacctgcccaaggacgagacc
cgctccgactggctgcagcgcccgctgaccgacatgcaggtgcgctacgccgccgaggac
gtgcagcacctggccgaggtctacgtgaagctggcgccgcgcctgagcgacgagaagctg
cagtggctgctggccgatggcaccgacctgaccaacaaccagagtcgcgtcagcgacccg
caggaggcctacctcgacgtcaagctggcgtggaagctcaatcgcctgcaactggccgtg
ctgcgcgagctgtgcgtctggcgcgaggagcaggcgcggttgcgcaacaagccgcgtaac
catgtgctgcgcgagcacaccctgtggccgctggcgcgtttccagccggccgacaaggtc
gccctggcgcgtatcgacgacatgcacccgcgcaccgtgcgccaggatggcgacaccctg
atcgcgctgatcgcccacgcggcgaggctgccggaagccgttcatcccgagacgctgccc
gagccgctgccgcgcgaggttacgccggtactgaagaagttgcgcgaagtcggccagaaa
gaggccgagcgcctgaacatggcccccgagctgatgctgcgcaagaaggtactcgaggcg
ctgctcaagaccggctggccgaacggcccctaccaactgcccgagtcgctgcagggttgg
cgccgcgaactgatgggccaggccttgctggacagccttgccgtccagctcaccgaataa
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