Pseudomonas sp. ATCC 13867: H681_08540
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Entry
H681_08540 CDS
T02524
Name
(GenBank) ATP-dependent RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pdr
Pseudomonas sp. ATCC 13867
Brite
KEGG Orthology (KO) [BR:
pdr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pdr03009
]
H681_08540
Enzymes [BR:
pdr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H681_08540
Ribosome biogenesis [BR:
pdr03009
]
Prokaryotic type
rRNA helicases
H681_08540
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGI23582
UniProt:
M4WXV7
LinkDB
All DBs
Position
1869188..1870510
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AA seq
440 aa
AA seq
DB search
MFSQFALHERLLKALDSLSFSEPTPVQAAAIPKALEGRDLRVTAQTGSGKTAAFVLPLLH
RLLTEDKPRSGARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRK
NPEIIIGTPGRLNEQFNAGNLPLGDVEVLVLDEADRMLDMGFSEDVLKLAAQCPAERQTL
LFSATSGSGLHAMVEQVLREPETLQLNRVSELNEDVSQQVILTDHVGHKEELLQWLLTNE
TYEKAIVFTNTRVAADRLTGRLIAAGHKVFVLHGEKDQKDRKLAIERLKQGAVKVLVATD
VAARGLDVDGLDLVINFDIPRRGDEYVHRIGRTGRAGASGTAISLVGHGDWNLMSSIERY
LKLRFELRVIKELKGTYKGPKKVKASGKAAGTKKKKDDAKKTGGKAPAKKKPAAKPKAGP
SRVVSQDGMAPLKRKKPAAE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
ttgttctcccaattcgccctgcacgaacgcctgctcaaggcgctcgattcgttgtccttc
tccgagccgaccccggtccaggccgcggccatcccgaaggccctggagggacgcgacctg
cgggtgacggcgcagaccggcagcggcaagaccgccgccttcgtgctgccgttgctgcat
cgcctgctcaccgaggacaagcccaggagcggcgcccgcgcgctgatcctgctgccgacc
cgcgaactggcccagcagaccctcaaggaagtcgagcgcttcgcccagttcaccttcatc
aaggcctgcctgatcaccggcggcgaagacttcaaggtgcagggcgcgcgcctgcgcaag
aacccggaaatcatcatcggcaccccgggccgcctgaacgagcagttcaacgctggcaac
ctgccgctgggtgacgtggaagtgctggtgctcgacgaagccgaccgcatgctcgacatg
ggcttctccgaggacgtgctcaagctcgccgcgcagtgcccggccgagcgccagaccctg
ctgttctccgccaccagcggcagcggcctgcatgcgatggtcgagcaggtcctgcgcgag
ccggagaccctgcagctcaaccgtgtcagcgagttgaacgaggatgtcagccagcaggtg
atcctgaccgaccacgtcggccacaaggaagagttgctgcagtggctgctgaccaacgag
acctatgagaaggccatcgtcttcaccaacacccgcgttgccgccgaccgcctcaccggc
cgcctgatcgctgccggccacaaggtcttcgtcctgcacggcgagaaggaccagaaggac
cgcaagctggccatcgagcgcctgaagcagggcgcggtgaaggtgctggtcgccaccgac
gtggccgcccgtggcctggacgtcgacggcctggatttggtgatcaacttcgacatcccg
cgtcgtggcgacgaatacgtgcaccgcatcggccgcaccggccgcgcgggtgcctcgggg
actgcgatctcgctggtcggtcatggcgactggaacctgatgtcgagcatcgagcgctac
ctcaagctgcgtttcgagctgcgtgtcatcaaggagctgaagggcacctacaaggggccg
aagaaggtcaaggcgtcgggcaaggccgccggcaccaagaagaaaaaggacgatgcgaag
aagaccggcggcaaggcgccggcgaagaagaagccggccgccaagcccaaggctggcccg
tccagggtggtgagccaggatggcatggcgcccctgaagcgcaagaagccggcggcggag
taa
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